GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000249-TA|BGIBMGA000249-PA|IPR000618|Insect cuticle
protein
         (178 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z74033-4|CAA98477.1|  407|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 138 FPQVYPSPGPLTYPKFGPTPFPEYENFDF-DGQIFPQ 173
           FP+  P P P+ +PK  P P P+++   F    +FP+
Sbjct: 201 FPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPK 237



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 136 QAFPQVYPSPGPLTYPKFGPTPFPE 160
           + FP   P P P   PK  P PFP+
Sbjct: 101 EPFPNPMPFPKPKPMPKHKPKPFPK 125



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 136 QAFPQVYPSPGPLTYPKFGPTPFPEYENFDF-DGQIFPQ 173
           + FP   P P P+  PK  P P P+++   F    +FP+
Sbjct: 29  EPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPK 67



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 136 QAFPQVYPSPGPLTYPKFGPTPFPEYENFDF-DGQIFPQ 173
           + FP   P P P+  PK  P P P+++   F    +FP+
Sbjct: 165 EPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPK 203


>Z74033-4|CAA98477.1|  407|Caenorhabditis elegans Hypothetical
           protein F38B7.3 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 139 PQVYPSPGPLTYPKFGPTPFPEYENFDFDGQIFPQYNQF 177
           P VYPS  P   P + P P    +++    Q+ P Y Q+
Sbjct: 165 PTVYPSAPPPVQPGYNPRP-ASGQSYPSGPQVPPAYGQY 202


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,882
Number of Sequences: 27539
Number of extensions: 85097
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 33
length of query: 178
length of database: 12,573,161
effective HSP length: 77
effective length of query: 101
effective length of database: 10,452,658
effective search space: 1055718458
effective search space used: 1055718458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)