GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000249-TA|BGIBMGA000249-PA|IPR000618|Insect cuticle
protein
         (178 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33680.1 68414.m04166 KH domain-containing protein similar to...    27   7.1  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    27   7.1  

>At1g33680.1 68414.m04166 KH domain-containing protein similar to
           FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
           sapiens]
          Length = 759

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 138 FPQVYPSPG----PLTYPKFGPTPFPEYENFDFDGQIFPQY 174
           + QV P+ G    P T P +G TP     N+ + G  +P Y
Sbjct: 674 YGQVPPTGGYSSYPSTQPAYGNTPAQSNGNYGYIGSQYPSY 714


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 138 FPQVYPSP---GPLTYPKFGPTPFP 159
           +PQV PSP    PL YP   P+P P
Sbjct: 605 YPQVTPSPPPPSPLYYPPVTPSPPP 629


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,360
Number of Sequences: 28952
Number of extensions: 76699
Number of successful extensions: 396
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 8
length of query: 178
length of database: 12,070,560
effective HSP length: 77
effective length of query: 101
effective length of database: 9,841,256
effective search space: 993966856
effective search space used: 993966856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)