Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000248-TA|BGIBMGA000248-PA|IPR000618|Insect cuticle
protein
         (137 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       29   0.011
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   1.7  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   5.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    20   9.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   9.2  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 0.011
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 85  TRDGDVVKGQYTVVE-PDGSIRTVDYTAD 112
           T DG +V G+Y VV   DGS+R V YTAD
Sbjct: 211 TSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 93  GQYTVVEPDGSIRTVDYTADKYNGFNA 119
           G Y    P+G I   D +    NG++A
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSA 168


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 44  LGFEHHHISEDEPVDYYAYPKYEFKYGVNDFHTGDIKTHYETRDGDVVKGQYTVVEPDGS 103
           L  +H H + D+ + Y A     ++    ++H  +I  +  T       G Y    P+G+
Sbjct: 14  LHVQHSHGATDKVICYVASWAI-YRPDKGEYHPKNIDPNICTHINYAFLGVY----PNGT 68

Query: 104 IRTVDYTADKYNGFNAIVHKTAPISPH 130
           ++ +D   D   G  A V     I+P+
Sbjct: 69  LQMIDEWGDIEKGNFAEVEALKEINPN 95



 Score = 21.4 bits (43), Expect = 3.0
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 88  GDVVKGQYTVVEPDGSIRTVDYTADKYNGFNAIVHKTAPI--SPHEAAHL 135
           GD+ KG +  VE    I     T     G+NA     API  SP   A+L
Sbjct: 76  GDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAILAPIAASPELRANL 125


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 90  VVKGQYTVVEPDGSIRTVDY 109
           VV G++   EP  +I++ DY
Sbjct: 279 VVDGEFLTDEPIATIKSGDY 298


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol
          oxidase subunit 2 protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 25 PTKHVDLQPSGTILHAEPHLGF 46
          P K + + P G IL  E    F
Sbjct: 59 PVKKISIPPLGEILELERDANF 80


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax
          protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 28 HVDLQPSGTILHAEPHLGFEHH 49
          HV  +P    LH  PHL    H
Sbjct: 29 HVAHRPGLQGLHHSPHLNHAMH 50


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,151
Number of Sequences: 317
Number of extensions: 1613
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 137
length of database: 114,650
effective HSP length: 51
effective length of query: 86
effective length of database: 98,483
effective search space:  8469538
effective search space used:  8469538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)