Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000248-TA|BGIBMGA000248-PA|IPR000618|Insect cuticle
protein
(137 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 1.8
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 1.8
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 3.2
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 25 5.5
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 25 5.5
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 5.5
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 25 5.5
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 25 5.5
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 7.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 24 9.7
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 24 9.7
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 24 9.7
>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 26.2 bits (55), Expect = 1.8
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 19 VLTYFRPTKHVDLQPSGTILHAEPHLGFEH---HHISEDEPVDYYAYPKYEFKYGVNDFH 75
VL Y P+ H+D + +H+ P H H E + Y P ++ ND +
Sbjct: 28 VLRYASPSMHLDWRFPSLRIHSYPKDQSTHAWKMHCMPTEIIAYQPIPVFQRLLHSNDIY 87
Query: 76 TGDIKTHYET 85
+T Y T
Sbjct: 88 FPYFQTRYTT 97
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 77 GDIKTHYETRDGDVVKGQYTVVEPDGSIRTV 107
GD+ YE G + + T+ E DGS T+
Sbjct: 69 GDVTRRYEINFGQIYLSRPTMTEADGSTTTM 99
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 37 ILHAEPHLGFEHHHISEDEPVDY 59
+L AEP + + + ED+PVDY
Sbjct: 140 VLEAEPQIYSYNLKVLEDDPVDY 162
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 35 GTILHAEPHLG-FEHHHISE 53
GTI+H E HLG FE H+ +
Sbjct: 193 GTIVHREHHLGSFEIIHVKD 212
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 35 GTILHAEPHLG-FEHHHISE 53
GTI+H E HLG FE H+ +
Sbjct: 193 GTIVHREHHLGSFEIIHVKD 212
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 30 DLQPSGTILHAEPHLGFEHHHISEDE 55
D QPS LH GF+++ +DE
Sbjct: 243 DNQPSSAELHEAQKFGFDNNESDQDE 268
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 35 GTILHAEPHLG-FEHHHISE 53
GTI+H E HLG FE H+ +
Sbjct: 193 GTIVHREHHLGSFEIIHVKD 212
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 58 DYYAYPKYEFKYGVNDFHTGDI 79
D Y YPKY F++ GDI
Sbjct: 42 DAYEYPKYSFEWSNVSILEGDI 63
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 20 LTYFRPTKHVDLQPSGTILHAEPHLGFEHH 49
L + P K L P I +EP +GF+++
Sbjct: 93 LPHEAPIKEAKLGPDTNIRPSEPRIGFQNY 122
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 67 FKYGVNDFH------TGDIKTHYETRDGDVVKGQYT 96
FK+ +N +H T I+ +YE R+ + KG Y+
Sbjct: 48 FKWVLNAYHERLRSCTSCIQAYYELRNESLAKGSYS 83
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 2 SLKGLILLATVACAHSRVLTYFRPTKHVDLQPSGTILHAEPHLGF 46
SL I + + + +V+ F+PTK D Q + EP F
Sbjct: 419 SLTSQISIKDIDSKNKQVIKLFKPTKSSDRQEIFELAQFEPRQKF 463
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 46 FEHHHISEDEP 56
FEH H SEDEP
Sbjct: 358 FEHGHESEDEP 368
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,877
Number of Sequences: 5004
Number of extensions: 31581
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 12
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)
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