Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000248-TA|BGIBMGA000248-PA|IPR000618|Insect cuticle
protein
         (137 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   5.5  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   7.3  
SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_31473| Best HMM Match : HATPase_c (HMM E-Value=0.0029)              27   7.3  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   7.3  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  

>SB_18447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 41  EPHLGFEHHHISEDE---PVDYYAYPKYEFKYGVNDFHTGDIKTHYETRDGDVVKGQYTV 97
           E HL  +  HI  DE    +D      YE     ++ HT   + H +T    +++  Y +
Sbjct: 44  EIHLDTDEFHIETDELHIDIDELHIETYELYIDTDELHTDRNEIHIDTDSYTMMETSYRL 103

Query: 98  VEPDGSIRTVDYT 110
            +   ++    YT
Sbjct: 104 TKKSYTLTRTSYT 116


>SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 34  SGTILHAEPHLGFEHHHISEDEPVDYYA 61
           S  +L+++ H GF  H IS   P  YYA
Sbjct: 417 SQCVLNSDTHFGFPEHFISGSAPGAYYA 444


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/69 (26%), Positives = 24/69 (34%)

Query: 58  DYYAYPKYEFKYGVNDFHTGDIKTHYETRDGDVVKGQYTVVEPDGSIRTVDYTADKYNGF 117
           DY    +    Y  N+    D  T++E  D D      T  +      T D  AD Y   
Sbjct: 574 DYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTNDEEADNYKTN 633

Query: 118 NAIVHKTAP 126
           N   +  AP
Sbjct: 634 NDTTNHEAP 642


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 50  HISEDEPVDYYAYPKYEFKYGVNDFHTGDIKTHYETRDGDVVKGQYTVVEPDGSIRTVDY 109
           H  +  P  Y     YEF+ G    H       +E    +++KG+   + P   +  +DY
Sbjct: 291 HCFDQRPYAYIPLSYYEFRLGE---HRESTTEGWE----EIIKGEKLFIHPKYKLGGLDY 343

Query: 110 TAD 112
           T D
Sbjct: 344 TGD 346


>SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 25  PTKHVDLQPSGTILHAEPHLGFEHHHISEDEPVDYYAYPK 64
           P     L P GT +  + HLG    H+S  +   +  +PK
Sbjct: 248 PPVFTALLPDGTTMEQKIHLGGHRQHLSITQEQAFVYFPK 287


>SB_31473| Best HMM Match : HATPase_c (HMM E-Value=0.0029)
          Length = 354

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 98  VEPDGSIRTVDYTADKY-NGFNAIVHKTAPIS 128
           ++PDG +   D+TAD++   F  I++K   +S
Sbjct: 242 IDPDGLLVKSDFTADEFLKAFEVIINKEKYVS 273


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 50  HISEDEPVDYYAYPKYEFKYGVNDFHTGDIKTHYETRDGDVVKGQYTVVEPDGSIRTVDY 109
           H  +  P  Y     YEF+ G    H       +E    +++KG+   + P   +  +DY
Sbjct: 576 HCFDQRPYAYIPLSYYEFRLGE---HRESTTEGWE----EIIKGEKLFIHPKYKLGGLDY 628

Query: 110 TAD 112
           T D
Sbjct: 629 TGD 631


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 69   YGVNDFHTGDIKTHYETRDGDVVKGQYTVVEPDGSIRTVDYTADKYNGFNAI 120
            +G+ DF       H E   GD V     ++   G+ RT  +  +K   F A+
Sbjct: 1300 HGIRDFDQNAPMVHLEMEAGDTVFFHPLLIHGSGANRTSGFRKNKKGFFAAV 1351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,230,965
Number of Sequences: 59808
Number of extensions: 231532
Number of successful extensions: 471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 10
length of query: 137
length of database: 16,821,457
effective HSP length: 75
effective length of query: 62
effective length of database: 12,335,857
effective search space: 764823134
effective search space used: 764823134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)