Silkworm BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000248-TA|BGIBMGA000248-PA|IPR000618|Insect cuticle
protein
         (137 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z80223-8|CAB02322.1|  312|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical ...    26   8.3  

>Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical
           protein F21D5.3 protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 45  GFEHHHIS--EDEPVDYYAYPKYEFKYGVNDFHTGDIKT 81
           GFE H I+   D  +D + +   +F +G+  +H GD++T
Sbjct: 457 GFEEHFINMHHDSQMDQFLF---QFPWGIPYYHDGDMET 492


>Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 60  YAYPKYE-----FKYGVNDFHTGDIKTHYETRDGDVVKGQYTVVEPDGSIRT 106
           + YPK+E       +G+ D+ T   + H E   GD V     ++   G+ RT
Sbjct: 187 HEYPKWEGGVNKAYHGIQDYDTSTPRIHVEMEPGDTVFFHPILIHGSGANRT 238


>Z80223-8|CAB02322.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 60  YAYPKYE-----FKYGVNDFHTGDIKTHYETRDGDVVKGQYTVVEPDGSIRT 106
           + YPK+E       +G+ D+ T   + H E   GD V     ++   G+ RT
Sbjct: 187 HEYPKWEGGVNKAYHGIQDYDTSTPRIHVEMEPGDTVFFHPILIHGSGANRT 238


>AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical
           protein F53C3.4 protein.
          Length = 224

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 17  SRVLTYFRPTK-HVDLQPSGTILHAEPHLGFEHHHISEDEPVDYYAY 62
           +++ +Y   T+ HV + P+  I++ + H  +E HH+   +  D   Y
Sbjct: 55  AKLFSYSPITRTHVIISPASPIIYGDYHYYWEGHHVYTTQKPDKCDY 101


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,863,923
Number of Sequences: 27539
Number of extensions: 171169
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 12,573,161
effective HSP length: 74
effective length of query: 63
effective length of database: 10,535,275
effective search space: 663722325
effective search space used: 663722325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)