GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000248-TA|BGIBMGA000248-PA|IPR000618|Insect cuticle
protein
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   1.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   1.8  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   3.2  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    25   5.5  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    25   5.5  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   5.5  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    25   5.5  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    25   5.5  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   7.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    24   9.7  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   9.7  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    24   9.7  

>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 138

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 19 VLTYFRPTKHVDLQPSGTILHAEPHLGFEH---HHISEDEPVDYYAYPKYEFKYGVNDFH 75
          VL Y  P+ H+D +     +H+ P     H    H    E + Y   P ++     ND +
Sbjct: 28 VLRYASPSMHLDWRFPSLRIHSYPKDQSTHAWKMHCMPTEIIAYQPIPVFQRLLHSNDIY 87

Query: 76 TGDIKTHYET 85
              +T Y T
Sbjct: 88 FPYFQTRYTT 97


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 77  GDIKTHYETRDGDVVKGQYTVVEPDGSIRTV 107
           GD+   YE   G +   + T+ E DGS  T+
Sbjct: 69  GDVTRRYEINFGQIYLSRPTMTEADGSTTTM 99


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 37  ILHAEPHLGFEHHHISEDEPVDY 59
           +L AEP +   +  + ED+PVDY
Sbjct: 140 VLEAEPQIYSYNLKVLEDDPVDY 162


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 35  GTILHAEPHLG-FEHHHISE 53
           GTI+H E HLG FE  H+ +
Sbjct: 193 GTIVHREHHLGSFEIIHVKD 212


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 35  GTILHAEPHLG-FEHHHISE 53
           GTI+H E HLG FE  H+ +
Sbjct: 193 GTIVHREHHLGSFEIIHVKD 212


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 30  DLQPSGTILHAEPHLGFEHHHISEDE 55
           D QPS   LH     GF+++   +DE
Sbjct: 243 DNQPSSAELHEAQKFGFDNNESDQDE 268


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 35  GTILHAEPHLG-FEHHHISE 53
           GTI+H E HLG FE  H+ +
Sbjct: 193 GTIVHREHHLGSFEIIHVKD 212


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 58 DYYAYPKYEFKYGVNDFHTGDI 79
          D Y YPKY F++       GDI
Sbjct: 42 DAYEYPKYSFEWSNVSILEGDI 63


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 20  LTYFRPTKHVDLQPSGTILHAEPHLGFEHH 49
           L +  P K   L P   I  +EP +GF+++
Sbjct: 93  LPHEAPIKEAKLGPDTNIRPSEPRIGFQNY 122


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
          Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 6/36 (16%)

Query: 67 FKYGVNDFH------TGDIKTHYETRDGDVVKGQYT 96
          FK+ +N +H      T  I+ +YE R+  + KG Y+
Sbjct: 48 FKWVLNAYHERLRSCTSCIQAYYELRNESLAKGSYS 83


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 2   SLKGLILLATVACAHSRVLTYFRPTKHVDLQPSGTILHAEPHLGF 46
           SL   I +  +   + +V+  F+PTK  D Q    +   EP   F
Sbjct: 419 SLTSQISIKDIDSKNKQVIKLFKPTKSSDRQEIFELAQFEPRQKF 463


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)

Query: 46  FEHHHISEDEP 56
           FEH H SEDEP
Sbjct: 358 FEHGHESEDEP 368


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,877
Number of Sequences: 5004
Number of extensions: 31581
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 12
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)