GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000248-TA|BGIBMGA000248-PA|IPR000618|Insect cuticle
protein
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.51 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   0.89 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    20   8.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          20   8.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   8.3  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    20   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 92  KGQYTVVEPDGSIRTVDYTADKYNGFN 118
           KG+  + EP GS+R    + D  NG +
Sbjct: 197 KGRLVITEPVGSVRPKFPSMDNINGLS 223


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 94  QYTVVEPDGSIRTVDYTADKYNGFNAIV 121
           QY + +P  +  TVDY  +K   F+ +V
Sbjct: 163 QYDIGKPVVAEETVDYMLEKSGNFSRLV 190



 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 73  DFHTGDIKTHYETRDGDVVKGQ 94
           D  T  +  HY TR   + KGQ
Sbjct: 295 DLQTSIMSRHYSTRAIVIEKGQ 316


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
          protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 5  GLILLATVACAHSRVLTYFRPTKHVD 30
          GL+ +A VA   + V   F P +H +
Sbjct: 8  GLLFMAMVAIMAAPVEDEFEPLEHFE 33


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 95  YTVVEPDGSIRTVDYTADKYNGFNAIVHKTAPISPHEAAHLHH 137
           + ++ P+ +I +V Y        NA+  K   ++  ++   HH
Sbjct: 80  FELLSPNRTINSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHH 122


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 47  EHHHISEDEPVDYYAYPKYEFKYGV 71
           E  ++S D P+    YP   F+ G+
Sbjct: 280 EVSYVSLDHPIPTGYYPTMRFRNGL 304


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
          precursor protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 5  GLILLATVACAHSRVLTYFRPTKHVD 30
          GL+ +A VA   + V   F P +H +
Sbjct: 8  GLLFMAMVAIMAAPVEDEFEPLEHFE 33


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,256
Number of Sequences: 429
Number of extensions: 1984
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)