Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000247-TA|BGIBMGA000247-PA|IPR000618|Insect cuticle
protein
         (168 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       28   0.035
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   9.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   9.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 0.035
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 63  QYRNEERYPNGTVTGSYGYVD-AAGKPQRFRYVAD 96
           +YR EER  +G + G YG V    G  +  RY AD
Sbjct: 204 KYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed
          protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 37 YVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGSYGY 81
          Y +N    PG   FG   +        Y N + Y +  ++  YGY
Sbjct: 37 YNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription
          factor Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 37 YVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGSYGY 81
          Y +N    PG   FG   +        Y N + Y +  ++  YGY
Sbjct: 37 YNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 37 YVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGSYGY 81
          Y +N    PG   FG   +        Y N + Y +  ++  YGY
Sbjct: 37 YNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
          transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 37 YVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGSYGY 81
          Y +N    PG   FG   +        Y N + Y +  ++  YGY
Sbjct: 37 YNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGY 81


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 109 LPLVQAQTPPVRMPGDSATESSITWSRPK 137
           LP+ Q+Q PP +  G   +E    +S PK
Sbjct: 544 LPMQQSQNPPTKPYGTCRSEG--IFSDPK 570


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 40  NVNGNPGTY 48
           N N NPGTY
Sbjct: 279 NTNYNPGTY 287


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)

Query: 144 PVAEMMKSEENININSLRQPSFY 166
           P  +M+ S+E   ++S+  PS +
Sbjct: 9   PKRDMLDSQEKTPLSSVSYPSMF 31


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,001
Number of Sequences: 317
Number of extensions: 1975
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 168
length of database: 114,650
effective HSP length: 52
effective length of query: 116
effective length of database: 98,166
effective search space: 11387256
effective search space used: 11387256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)