GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000247-TA|BGIBMGA000247-PA|IPR000618|Insect cuticle
protein
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.5  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   3.4  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   5.9  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   5.9  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   7.8  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    25   7.8  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 121 MPGDSATESSITWSRPKKKNKRKPVAEMMKSEEN--ININSLR 161
           M   S T      +RPKKK  +K     + +EEN  ++I SLR
Sbjct: 60  MESASGTAELSKKTRPKKKGSKKSSKSELDNEENLKVHIQSLR 102


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 35  IYYVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGS 78
           +Y  ++ NGNP +  FG+     +   S     ER P G +  S
Sbjct: 178 VYPTQDENGNPLSIEFGFSTFRDHQSISLQEMPERAPPGQLPRS 221


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 118 PVRMPGDS-ATESSITWSRPKKKNKRKPVAEMMKSEENININSLRQ 162
           P ++  ++ + +  +   R  ++ KRK   E +K+++N   N+L+Q
Sbjct: 511 PAKIKNEAWSKQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQ 556


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 137 KKKNKRKPVAEMMKSEENININSLRQPS 164
           K  N RKP+++   + E +N + + +PS
Sbjct: 65  KATNSRKPLSKFQSNTEEVNEDPILKPS 92


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 2   RVYIGFSVALSWLSQASSAPRKPRLTVAEDDMPIY----YVRNVNGNPGTYSFGYDILDP 57
           R+Y+  +    +     +A  +P L +  + +P      +VR+VN  PG  +   +    
Sbjct: 206 RIYVPKAEQEMYEYYVRAAKERPYLNLQVEYLPEEITPEWVRDVNDKPGLLALAMEKYQD 265

Query: 58  NTGNSQYRNEE-RYPNGTVTGSYGY 81
           + GN+  R      P G     YG+
Sbjct: 266 DEGNTHLRGVPFVVPGGRFNELYGW 290


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 121 MPGDSATESSITWSRPKKKNKRKPVAEMMKSEE--NININSLRQPSFYAT 168
           + GD ATE  +T S  K + + +   E  K E+  +I   +     FYA+
Sbjct: 127 LEGDDATEKFVTSSYKKHREEVQKAIEDRKEEDEKSITDTTTGMKDFYAS 176


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,042
Number of Sequences: 5004
Number of extensions: 38354
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 7
length of query: 168
length of database: 2,362,478
effective HSP length: 68
effective length of query: 100
effective length of database: 2,022,206
effective search space: 202220600
effective search space used: 202220600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)