Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000247-TA|BGIBMGA000247-PA|IPR000618|Insect cuticle
protein
(168 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 29 1.5
06_01_0073 + 599296-599423,599803-599859,600418-600697 29 1.9
04_03_0769 - 19409688-19409843,19409930-19410199,19410372-194104... 29 1.9
05_07_0168 + 28122429-28122650,28122651-28122725,28123066-281231... 29 2.6
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104... 28 3.4
03_04_0038 - 16718024-16718368,16718455-16719339 28 3.4
01_02_0102 - 11148219-11148563,11148650-11149534 28 3.4
12_02_0867 - 23828084-23828845,23828931-23829067,23829148-238293... 28 4.5
12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952 27 7.8
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780... 27 7.8
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 112 VQAQTPPVRMPGDSATESSITWSRPKKKNKRKPVAEMMKSEENININSLR 161
+ A T + MP +S +++ W +P K N P + + +E+ NSLR
Sbjct: 314 IPASTQSISMPQESTIPNNLLWRKPSKDN---PPNDFDEHKEDGQENSLR 360
>06_01_0073 + 599296-599423,599803-599859,600418-600697
Length = 154
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/54 (35%), Positives = 23/54 (42%)
Query: 25 RLTVAEDDMPIYYVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGS 78
R + EDDMP R PG G + TG ++ R ERY T GS
Sbjct: 54 RCEITEDDMPADRARRERMRPGGQRRGRRGNEAVTGWARRRRAERYSIVTAGGS 107
>04_03_0769 -
19409688-19409843,19409930-19410199,19410372-19410460,
19410539-19410602,19410679-19410722,19410938-19411012,
19411760-19411802,19411913-19411982,19412260-19412279
Length = 276
Score = 29.1 bits (62), Expect = 1.9
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Query: 1 MRVYIGFSVALSWLSQASSAPRKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYDILDPNTG 60
MR + F S S A S P + + +P YV + Y + P +G
Sbjct: 46 MRTQVAFGQGNS--SYARSFPMQSSADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSG 103
Query: 61 NSQYRNEERYPNGTVTGSYGYVDAAGKPQRFRYVADEKGYRIFQEISHLPL 111
+ + NEE + + TG+ + + +D+ FQ + LPL
Sbjct: 104 DPEILNEEEFGESSATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPL 154
>05_07_0168 +
28122429-28122650,28122651-28122725,28123066-28123122,
28123248-28123411,28123672-28123806,28123908-28124010,
28124165-28124264,28124348-28124556
Length = 354
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 38 VRNVNGNPGTYSFGY 52
+RNVNG P ++SFGY
Sbjct: 194 IRNVNGKPFSFSFGY 208
>04_01_0101 +
1041755-1041864,1041950-1042102,1042174-1042424,
1042878-1043060,1043163-1043310,1043787-1043958,
1057226-1057366,1057478-1057624
Length = 434
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 84 AAGKPQRFRYVADEKGYRIFQEISHLPLVQAQTPPVRMPGDSATESSI 131
AAG + DE Y I+ E +H P R+PG S++ S++
Sbjct: 71 AAGATSLGTTIMDEMAYSIYGENAHYGTPANPCAPGRVPGGSSSGSAV 118
>03_04_0038 - 16718024-16718368,16718455-16719339
Length = 409
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 115 QTPPVRMPGD-SATESSITWSRPKKKNKRKPVAEMMKSEENININSL 160
++ R PGD AT+ + P+KK +PV ++ KS + N L
Sbjct: 353 ESDTARKPGDREATKKLPKQATPRKKTSSRPVPKIRKSSRYKSYNDL 399
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 115 QTPPVRMPGD-SATESSITWSRPKKKNKRKPVAEMMKSEENININSL 160
++ R PGD AT+ + P+KK +PV ++ KS + N L
Sbjct: 353 ESDTARKPGDREATKKLPKQATPRKKTSSRPVPKIRKSSRYKSYNDL 399
>12_02_0867 -
23828084-23828845,23828931-23829067,23829148-23829354,
23830226-23831027
Length = 635
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 124 DSATESSITWSRPKKKNKRKPVAEMMKSEENININSLRQPSF 165
D +++ +T S P K + + AE+ + E NI N L++ +F
Sbjct: 337 DDESKAHVTDSEPMSKIEEELEAELARLELNITSNCLKEQTF 378
>12_02_0927 + 24473634-24474236,24474464-24474518,24474579-24474952
Length = 343
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 120 RMPGDSATESSIT-WSRPKKKNKRKPVAEMMKSEENININSL 160
R PGD T + + P+KK +PV ++ KS + N L
Sbjct: 292 RRPGDRETTKKLPKQATPRKKTSSRPVPKIRKSSRCNSYNDL 333
>05_07_0352 -
29475855-29476330,29476421-29477165,29477689-29478081,
29478167-29478473,29478694-29479019
Length = 748
Score = 27.1 bits (57), Expect = 7.8
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 21 PRKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGSYG 80
P + L V + DM YV G PG D + + R +E++ G Y
Sbjct: 543 PTQNVLAVCDFDMRFTYV--ATGQPGAMH------DTSVLYNALRVDEKFFPHPPQGKYY 594
Query: 81 YVDAAGKPQRFRYVADEKGYR 101
VDA G P R Y+A KG R
Sbjct: 595 VVDA-GHPNRPGYLAPYKGER 614
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,427,868
Number of Sequences: 37544
Number of extensions: 233708
Number of successful extensions: 523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 10
length of query: 168
length of database: 14,793,348
effective HSP length: 77
effective length of query: 91
effective length of database: 11,902,460
effective search space: 1083123860
effective search space used: 1083123860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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