GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000247-TA|BGIBMGA000247-PA|IPR000618|Insect cuticle
protein
         (168 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6)                   28   4.6  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    27   6.0  
SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)                       27   6.0  
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                27   6.0  
SB_13675| Best HMM Match : SAP (HMM E-Value=0.0036)                    27   6.0  
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)               27   6.0  
SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2)                  27   6.0  
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)                   27   6.0  
SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036)                    27   6.0  
SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)                   27   8.0  
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   8.0  
SB_34025| Best HMM Match : Homeobox (HMM E-Value=1.1e-35)              27   8.0  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    27   8.0  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    27   8.0  
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 27   8.0  
SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67)                  27   8.0  
SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_3105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 36  YYVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPN-GTVTGSYGYVDA------AGKP 88
           +Y   V  NP T    ++I+DP    S+ RN   Y     V G  G + A       GKP
Sbjct: 180 FYHNLVEVNPDTKEAIFEIIDPEADTSKERNRLSYKTAAAVAGQSGVLKANLYSLMEGKP 239

Query: 89  QRFRY 93
            R  Y
Sbjct: 240 MRAAY 244


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 117  PPVRMPGDSA--TESSITWSRPKKKNKRKPVAEMMKSEENININSLRQPSFYA 167
            PPV  P   +  T +  TW   KK+++ K +AE  K+E+ +    ++    YA
Sbjct: 1267 PPVNSPESHSMLTSAVETWFLQKKRHRSKKLAEDRKNEQRVQRAIVKLRQLYA 1319


>SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 22  RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD-ILDPNTGNSQYRNE 67
           R PR   + DD+P ++ +NV+  P T S G D   D   G+    NE
Sbjct: 106 RIPRPFPSADDLPEFHYKNVHSTPLTDSKGTDRDFDQQFGSEDSENE 152


>SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 111 LVQAQTPPVRMPGDSATES-SITWSRPKKKNKRKP 144
           L  +  P  R P DS +ES S+TW + +KK + KP
Sbjct: 131 LGSSSKPWSRPPADSESESGSVTWEQGRKKIEAKP 165


>SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6)
          Length = 211

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 44  NPGTYS--FGYDILDPNTGNSQYRN---EERYPNGTVTGSYGYVDAAGKPQRF 91
           +PGTY    G      N   +++R    E RY  G V G+  Y    G+P +F
Sbjct: 72  SPGTYFPLLGTTFFTNNLTRTRFRGLELEGRYDAGFVYGAVSYTHYLGRPNKF 124


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22  RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD 53
           R PR   + DD+P ++ +NV+  P T S G D
Sbjct: 921 RIPRPFPSADDLPEFHYKNVHSTPLTDSKGND 952


>SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)
          Length = 632

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22  RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD 53
           R PR   + DD+P ++ +NV+  P T S G D
Sbjct: 448 RIPRPFPSADDLPEFHYKNVHSTPLTDSKGND 479


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 9    VALSWLSQASSAPRKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYDILDPNTGNSQYRNEE 68
            VAL WL + + A  KP    A+ D+ +  V  +        F  +  D       Y+N+ 
Sbjct: 1149 VALKWLEEHTQAESKP----ADGDLGVANVERLENILAPEGFQEEYQDRENQEKPYQNKR 1204

Query: 69   RYPN 72
             Y N
Sbjct: 1205 YYSN 1208


>SB_13675| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 240

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22 RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD 53
          R PR   + DD+P ++ +NV+  P T S G D
Sbjct: 3  RIPRPFPSADDLPEFHYKNVHSTPLTDSKGND 34


>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
          Length = 684

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 91  FRYVADEKG----YRIFQEISHLPLVQAQTPPVRMPGDSATESSITWSRPKKKNKRK 143
           F+ V  EKG    Y + Q +SHL   + +    + P D A  +      PKKK K+K
Sbjct: 404 FKPVKQEKGAAPEYSVAQMVSHLAEPEEKKKAKKHPSDHAGPA---LGEPKKKKKKK 457


>SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2)
          Length = 353

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22  RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD 53
           R PR   + DD+P ++ +NV+  P T S G D
Sbjct: 191 RIPRPFPSADDLPEFHYKNVHSTPLTDSKGND 222


>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
          Length = 1487

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22  RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD 53
           R PR   + DD+P ++ +NV+  P T S G D
Sbjct: 895 RIPRPFPSADDLPEFHYKNVHSTPLTDSKGND 926



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22   RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD 53
            R PR   + DD+P ++ +NV+  P T S G D
Sbjct: 1272 RIPRPFPSADDLPEFHYKNVHSTPLTDSKGND 1303


>SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 352

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22  RKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYD 53
           R PR   + DD+P ++ +NV+  P T S G D
Sbjct: 113 RIPRPFPSADDLPEFHYKNVHSTPLTDSKGND 144


>SB_58861| Best HMM Match : SET (HMM E-Value=1.3e-06)
          Length = 611

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 83  DAAGKPQRFRYVADEKGYRIFQEISHLPLVQAQTPPVRMPGDSA---TESSITWSRPKKK 139
           D   +  R R+ ADE   +      H P  Q   PP+R   D +   TE + T    ++K
Sbjct: 261 DLVAQRNRERHDADEPPAKRHHHTDHAP-AQRGRPPLRRAQDESRAKTELNSTSQAEERK 319

Query: 140 NKRKPVA 146
             R+ VA
Sbjct: 320 EDRRTVA 326


>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 600

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 123 GDSATESSITWSRPKKKNKRKPV 145
           G ++TE     +RPKKKNK KP+
Sbjct: 150 GTTSTERPERPNRPKKKNKPKPL 172


>SB_34025| Best HMM Match : Homeobox (HMM E-Value=1.1e-35)
          Length = 460

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 111 LVQAQTPPVRMPGDSATESSITWSRPKKKNKRKPVAEMMKS 151
           L+ A +P   MP D    + IT +RP+K +K +   + + S
Sbjct: 208 LLPANSPQDAMPKDRLRSNDITAARPRKVSKLRSFPDSVTS 248


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 40   NVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGSYGYVDAAG--KPQRFRYVA 95
            NV+ N GT   G+    P TG  +Y      P    TG+Y YV   G      +RYV+
Sbjct: 2253 NVDDNYGTRIRGF-FKAPETGAYRYVRISVRPGFLATGAYRYVRRPGFLATGAYRYVS 2309


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 25  RLTVAEDDMPIYYVRNVNGNPGTYSFGYDILDP-NTGNSQYRNEERYPNGTVTGSYGYVD 83
           RLT      P+Y           + + Y  L P N  N QY      P   +T  YGY  
Sbjct: 429 RLTYVNPGTPVYMNPIAPYEMQPWMYRYQQLYPYNNYNQQYSFSFGLPQYQMTSPYGYAP 488

Query: 84  AAG 86
            AG
Sbjct: 489 FAG 491


>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 15 SQASSAPRKPRLTVAEDDMP 34
          S+A    RKPR+T AED +P
Sbjct: 12 SEAKQERRKPRVTFAEDGLP 31


>SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67)
          Length = 237

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 97  EKGYRIFQEISHLPLVQAQTPPVRMPGDSAT--ESSITWSRPKKKNKRKPVAEMMKSEEN 154
           E  YRI +EI     +Q  T P  +PG         I  S P     R    E  KS   
Sbjct: 165 ESNYRIAREIIKSVAIQTCTGPEMIPGPETIPGPEMIPKSTPTDPRTRNDTEESPKSTPG 224

Query: 155 ININSLRQ 162
           I +   R+
Sbjct: 225 ITVMESRR 232


>SB_12630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 112 VQAQTPPVRMPGDSATESSITWSRPKKKNKRKPVAEMMKSEENININSLRQPS 164
           VQA  PP  +  D    S  T +RPK+   + P +    S   I++ +  +PS
Sbjct: 897 VQAPQPPRILNDDLKFISRATQARPKESLTKLPKSTATTSPTGISVETPTRPS 949


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,414,585
Number of Sequences: 59808
Number of extensions: 283260
Number of successful extensions: 517
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 24
length of query: 168
length of database: 16,821,457
effective HSP length: 77
effective length of query: 91
effective length of database: 12,216,241
effective search space: 1111677931
effective search space used: 1111677931
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)