GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000247-TA|BGIBMGA000247-PA|IPR000618|Insect cuticle
protein
         (168 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    31   0.32 
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    31   0.32 
AC024791-7|AAU20833.1|  278|Caenorhabditis elegans Hypothetical ...    30   0.98 
AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    27   6.9  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    27   6.9  

>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 110 PLVQAQTPPVRMPGDSATESSITWSRPKKK--NKRKPVAEMMKSEENIN 156
           P+  A TP     G +A  S+ T ++ +K+  NKRK V E++  +E+ N
Sbjct: 910 PVTPAPTPTTTTDGGAAAASTTTENKEEKRKSNKRKVVMEILGCDESRN 958


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 110 PLVQAQTPPVRMPGDSATESSITWSRPKKK--NKRKPVAEMMKSEENIN 156
           P+  A TP     G +A  S+ T ++ +K+  NKRK V E++  +E+ N
Sbjct: 910 PVTPAPTPTTTTDGGAAAASTTTENKEEKRKSNKRKVVMEILGCDESRN 958


>AC024791-7|AAU20833.1|  278|Caenorhabditis elegans Hypothetical
           protein Y47G6A.15 protein.
          Length = 278

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 13  WLSQASSAPRKPRLTVAEDDMPIYYVRNVNGNPGTYSFGYDILDPNTGNSQY 64
           ++S   + PR        D + + +V N NG+ G+  FG    +   G  QY
Sbjct: 214 FVSNQQNQPRASNTNQGLDRVDVIFVPNTNGDQGSIQFGNGSPNNGRGGGQY 265


>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 53  DILDPNTGNSQYRNEERYPNGTVTGSYGYVDAAGKPQRFRYVADEKGYRIFQEISHLPLV 112
           DI D   G      EE+ PN   T S         P   RY+ +     IFQE++HL  +
Sbjct: 630 DIYDDGDGRPSDDEEEKKPNDKETAS--------TPTNRRYIHERA---IFQELTHLKRM 678

Query: 113 QAQTPPVRMPGDSATESSITWSRP-KKKNKRKPVAEMMKSE----ENININSLRQPSFYA 167
           Q Q   V +   +A      +  P  ++ + K +   + S      N+++ + +  +FYA
Sbjct: 679 QIQYGKVLIARKNARALFRNYYHPGTEQVQEKVLVRSLISNFCKMHNLDVRNFKFTTFYA 738


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/78 (21%), Positives = 35/78 (44%)

Query: 81  YVDAAGKPQRFRYVADEKGYRIFQEISHLPLVQAQTPPVRMPGDSATESSITWSRPKKKN 140
           +   + K   F  +A+    R    ISH+P ++ Q  P+R     A   +    R  +++
Sbjct: 606 FTSESAKNSMFSVLAEPSLKRKHPGISHIPHMEHQKSPLRPRNAPAHHGASNGGRAPRED 665

Query: 141 KRKPVAEMMKSEENININ 158
           +R P A   ++ E + ++
Sbjct: 666 ERSPSARGAQNIEVMGVS 683


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/78 (21%), Positives = 35/78 (44%)

Query: 81  YVDAAGKPQRFRYVADEKGYRIFQEISHLPLVQAQTPPVRMPGDSATESSITWSRPKKKN 140
           +   + K   F  +A+    R    ISH+P ++ Q  P+R     A   +    R  +++
Sbjct: 647 FTSESAKNSMFSVLAEPSLKRKHPGISHIPHMEHQKSPLRPRNAPAHHGASNGGRAPRED 706

Query: 141 KRKPVAEMMKSEENININ 158
           +R P A   ++ E + ++
Sbjct: 707 ERSPSARGAQNIEVMGVS 724


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 124 DSATESSITWSRPKKKNKRKPVAEMMKSEENININSLRQP 163
           DS+ +SS      KKK K K   +  KS+E + I  +++P
Sbjct: 178 DSSDDSSDDEKPKKKKKKSKKPKKAPKSDEEVTIKIIKKP 217


>Z67734-2|CAA91528.2|  247|Caenorhabditis elegans Hypothetical
           protein B0198.2 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 99  GYRIFQEISHLPLVQAQTPPVRMPGDSATESSITWSRPKKKNKRKPVAEMMKSEENININ 158
           GYR   +  H P+ +   P +   G     SSI    P++  +  P   ++ S+ N ++N
Sbjct: 101 GYRPPMQFIHSPVSENGIPRMVHTGGRLPRSSIGCIPPRQAERPSPEQCLIYSQYNASLN 160

Query: 159 SL 160
            L
Sbjct: 161 KL 162


>Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical
           protein F49C5.10 protein.
          Length = 231

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 26  LTVAEDDMPIYYVRNVNGNPGTYSFGYDILDPNT-GNSQYRNEERYPNGTV 75
           +++  DD  I Y         T+S G  ++DP T G +QY+ +   P  T+
Sbjct: 125 VSIGSDDPAISYAPITCQKDNTFSSGATMVDPTTDGCTQYQIDCSPPGNTI 175


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 30  EDDMPIYYVRNVNGNPGTYSFGYDILDPNTGNSQYRNEERYPNGTVTGSYGYVDAAGKP- 88
           EDD P+  +     +P + S    I  P +  SQ +N  + P+ T + + G   +  +  
Sbjct: 382 EDDEPLEDISKATDSPHS-SEKSQI--PGSPGSQIKNPLK-PSSTESETIGPESSESEDD 437

Query: 89  -QRFRYVADEKGYRIFQEISHLPL-VQAQTPPVRMPGDSATESSITWSRPKKK 139
            +R      E+   + +     P+  QA  PP   P D  +  ++ + RPK K
Sbjct: 438 GERSTPTPQEEEEEMMRNFFPRPVSAQAYQPPGHQPEDFTSHINVNFKRPKGK 490


>Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 122  PGDSATESSITWSRPKKKNKRKPVAEMMKSEENI 155
            PG  ATE+ +    PKKK+ +       K +EN+
Sbjct: 1305 PGPEATETPVAEESPKKKSGKTTRGRPKKVKENL 1338


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 116 TPPVRMPGDSATESSITWSRPKKKNKRKPVAEMMKSEENININSLRQPS 164
           T PV  P  S    S+  S+P +   +KPV     SE     N L  P+
Sbjct: 190 TAPVSKPSLSKPRQSLAPSKPAEVTPQKPVPAAQASEAGDPPNELPLPT 238


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 59  TGNSQYRNEERYPNGTVTGSYGYVDAAGKPQRFRYVADEKGYRIFQEISHLPLVQAQTPP 118
           T  S+  +E +       G    VD   K    + VAD++G        HL  V+  +PP
Sbjct: 400 TRRSERLSEIQNNASKAQGQEEVVDTIVKSMLVKEVADKRGVSATTSDKHLSDVEVHSPP 459

Query: 119 VRMPGDSATESSI-TWSRPKKKNKRKPV 145
                 S     I T S P  + KR  V
Sbjct: 460 KTPQTPSILRVGIRTSSYPMTETKRNRV 487


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 122  PGDSATESSITWSRPKKKNKRKPVAEMMKSEENI 155
            PG  ATE+ +    PKKK+ +       K +EN+
Sbjct: 1305 PGPEATETPVAEESPKKKSGKTTRGRPKKVKENL 1338


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,700,124
Number of Sequences: 27539
Number of extensions: 210337
Number of successful extensions: 476
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 18
length of query: 168
length of database: 12,573,161
effective HSP length: 76
effective length of query: 92
effective length of database: 10,480,197
effective search space: 964178124
effective search space used: 964178124
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)