GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000247-TA|BGIBMGA000247-PA|IPR000618|Insect cuticle
protein
         (168 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    28   0.056
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 27.9 bits (59), Expect = 0.056
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 77  GSYGYVDAAGKPQRFRYVADEKGYRIFQEISHLPLVQAQTPPVR 120
           GS  Y    G+     YVADE G+++  + SH+P      P ++
Sbjct: 73  GSDSYTAPDGQQVSITYVADENGFQV--QGSHIPTAPPIPPEIQ 114


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/57 (21%), Positives = 31/57 (54%)

Query: 109  LPLVQAQTPPVRMPGDSATESSITWSRPKKKNKRKPVAEMMKSEENININSLRQPSF 165
            L +  A    V +PG++   ++ T S    ++ R+P++E + S  + + ++L + ++
Sbjct: 1294 LTVNHAYRDAVTVPGNNLIATNTTVSSGSSEDHRRPLSEHIYSSIDSDYSTLERTAW 1350


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 41  VNGNPGTYSFGYDILD 56
           VN NP T S  YD+ D
Sbjct: 417 VNYNPETVSTDYDMSD 432


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,205
Number of Sequences: 429
Number of extensions: 2747
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 168
length of database: 140,377
effective HSP length: 53
effective length of query: 115
effective length of database: 117,640
effective search space: 13528600
effective search space used: 13528600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)