Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000246-TA|BGIBMGA000246-PA|IPR000618|Insect cuticle
protein
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.43 
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    25   4.0  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   5.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   9.3  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 64  YPKYAFNY--GVKDLHTGDIKSQQEQRDGDVVKGSYSLVEPDGTTRTVHYTADD 115
           Y  ++FNY   V  + +G + ++QE+     V  S  + EP  T R +  TAD+
Sbjct: 274 YYGFSFNYLDSVVSVRSGTVLNKQEKGWAMEVNNSLCVEEPFNTARNLANTADN 327


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 60 ETVSYPKYAFNYGVKDLHTGDIKSQQEQRD 89
          +   YPKY+F +    +  GDI S +E+ +
Sbjct: 42 DAYEYPKYSFEWSNVSILEGDIDSIKEKTE 71


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 83  SQQEQRDGDVVKGSYSLVEPDGTTRTVHYTADDHTGFN 120
           S+Q +R+ D +K    L +   +T +VH + DD+   N
Sbjct: 228 SEQAKRERDDLKNIMQLEDESVSTTSVHDSEDDNLDSN 265


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 60  ETVSYPKYAFNYGVKDLHTGDIKSQQ 85
           ET+S P ++FN  V DLH  D K  Q
Sbjct: 198 ETLSQPAFSFN--VPDLHGVDNKVNQ 221


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,076
Number of Sequences: 5004
Number of extensions: 14199
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 2,362,478
effective HSP length: 67
effective length of query: 90
effective length of database: 2,027,210
effective search space: 182448900
effective search space used: 182448900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)