Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000246-TA|BGIBMGA000246-PA|IPR000618|Insect cuticle
protein
         (157 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43910.1 68415.m05458 thiol methyltransferase, putative simil...    28   3.3  
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II...    27   7.7  
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    27   7.7  

>At2g43910.1 68415.m05458 thiol methyltransferase, putative similar
           to thiol methyltransferase 1 GI:14583119 from [Brassica
           oleracea]
          Length = 227

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 94  KGSYSLVEPDGTTRTVHYTADDHTG 118
           K  Y L++PDG   T+ Y   DH G
Sbjct: 155 KSMYELLKPDGELITLMYPITDHVG 179


>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 646

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 75  DLHTGDIKSQQEQRDGDVVKGSYSLVE 101
           D   GD  SQ E+ DGD ++ SY L E
Sbjct: 349 DSSDGDSSSQDEE-DGDKIRNSYGLPE 374


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 65  PK-YAFNYGVKDLHTGDIKSQQEQRDGDVVKGSYSLVE 101
           PK YAF   ++ +HT D+K+  +Q DG  + G   LV+
Sbjct: 178 PKGYAF---IEYMHTRDMKAAYKQADGQKIDGRRVLVD 212


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,541
Number of Sequences: 28952
Number of extensions: 76138
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 12,070,560
effective HSP length: 75
effective length of query: 82
effective length of database: 9,899,160
effective search space: 811731120
effective search space used: 811731120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)