GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000246-TA|BGIBMGA000246-PA|IPR000618|Insect cuticle
protein
         (157 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011...    27   5.3  
07_01_1141 + 10705886-10706228,10706517-10706695                       27   7.0  
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130...    27   9.2  

>01_06_0430 +
           29299970-29300031,29300162-29300294,29301057-29301160,
           29302201-29302372,29302488-29302628,29302707-29303055,
           29303133-29305477
          Length = 1101

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 86  EQRDGDVVKGSYSLVEPDGTTRTVHYTADDHTGFNA 121
           +Q D DV  G  +L++P  +  T   T +DH GF++
Sbjct: 578 DQYDSDV--GEENLLDPFSSKHTEEPTVEDHKGFSS 611


>07_01_1141 + 10705886-10706228,10706517-10706695
          Length = 173

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 73  VKDLHTGDIKSQQEQRDGDVVKGSYSLVEPDGTTRTVHYTAD-DHTGFNAVVQK 125
           +K+   G+I  + +  D   V   Y+L E  G T+    TAD   T  N ++Q+
Sbjct: 109 IKESCAGEITRRMDTLDVQTVDIQYNLTEHIGQTQEWQQTADAQFTNINNMIQQ 162


>07_03_1093 +
           23912303-23912467,23912671-23912801,23913079-23913087,
           23913146-23913228,23914494-23914596,23915988-23916066,
           23916174-23916274,23916371-23916479
          Length = 259

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 95  GSYSLVEPDGTTRTVHYTADDHTGFNAVVQKSG 127
           G+Y LV  D     V Y+    +G+N VV  +G
Sbjct: 109 GNYFLVRHDAAVSCVEYSYSTVSGYNLVVATAG 141


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,226
Number of Sequences: 37544
Number of extensions: 94837
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 14,793,348
effective HSP length: 76
effective length of query: 81
effective length of database: 11,940,004
effective search space: 967140324
effective search space used: 967140324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)