GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000246-TA|BGIBMGA000246-PA|IPR000618|Insect cuticle
protein
         (157 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-3|AAF99986.2|  393|Caenorhabditis elegans Gtp exchange fa...    27   4.6  
AJ236896-1|CAB38534.1|  377|Caenorhabditis elegans GRP1 protein ...    27   4.6  
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    27   4.6  

>L15314-3|AAF99986.2|  393|Caenorhabditis elegans Gtp exchange
           factor for arfs protein1 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 62  VSYPKYAFNYGVKDLHTGDIKSQQEQRDGDVVKGSYSL 99
           V  P   F + +  L  G IK+ + ++DG +V+G +S+
Sbjct: 320 VEAPSRPFMFEIFSLSDGQIKACKTEQDGRLVEGRHSI 357


>AJ236896-1|CAB38534.1|  377|Caenorhabditis elegans GRP1 protein
           protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 62  VSYPKYAFNYGVKDLHTGDIKSQQEQRDGDVVKGSYSL 99
           V  P   F + +  L  G IK+ + ++DG +V+G +S+
Sbjct: 304 VEAPSRPFMFEIFSLSDGQIKACKTEQDGRLVEGRHSI 341


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 79  GDIKSQQEQRDGDVVKGSYSLVEPDGTTRTVHYTA 113
           G++K+ Q++ D  +++ + SL+  DG T  V+  A
Sbjct: 165 GNVKTSQQKADHHLIRTTRSLIGLDGETEAVYSKA 199


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,493
Number of Sequences: 27539
Number of extensions: 77161
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 12,573,161
effective HSP length: 76
effective length of query: 81
effective length of database: 10,480,197
effective search space: 848895957
effective search space used: 848895957
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)