Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000245-TA|BGIBMGA000245-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       31   0.004
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.58 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   9.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   9.5  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 31.5 bits (68), Expect = 0.004
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 91  YGVEDPHTGNLQNHKEQRDGDVVRGEYSLVE-PDGSVRLVRYTAD 134
           Y VE  +    +  +   DG +V GEY +V   DGS+R VRYTAD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 89  YAYGVEDPHTGNLQNHKEQRDGDVVRGEY 117
           YA+   DPH  N+ ++ +  + D+++G Y
Sbjct: 209 YAFATIDPHNFNMISNDD--ESDIIQGGY 235


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 85  PDYTYAYGVEDPHTGNLQNHKEQRDG 110
           P   Y Y    P++ N  NH+    G
Sbjct: 355 PQQQYYYNKNHPNSENYINHQNYVQG 380


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 85  PDYTYAYGVEDPHTGNLQNHKEQRDG 110
           P   Y Y    P++ N  NH+    G
Sbjct: 303 PQQQYYYNKNHPNSENYINHQNYVQG 328


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,820
Number of Sequences: 317
Number of extensions: 1942
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 170
length of database: 114,650
effective HSP length: 53
effective length of query: 117
effective length of database: 97,849
effective search space: 11448333
effective search space used: 11448333
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)