Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000245-TA|BGIBMGA000245-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.64 
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   1.1  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    25   4.5  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 14  ATPAFTGKTGGYSYNRFSGPVSGQIVEVQVPAAEGIPA 51
           A+ +  G +   SY  +SG VS  + ++ V A  GI A
Sbjct: 220 ASSSAAGNSSSSSYTSYSGAVSNGVAQLSVAACMGIAA 257


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 9    VAILLATPA--FTGKTGG-YSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGK 65
            V ++L  P   +TG      +Y+  S PVS  +V +      G+   Q+A Y YD ++ K
Sbjct: 966  VEVILPAPTTIYTGTVATTITYSSSSTPVS-TVVVIPTAVCSGVRGLQYAVYNYDISASK 1024


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 146 KAGGQAQAPVHYGHPKQDE 164
           + G  A+APVHY  P +D+
Sbjct: 127 ETGQDAKAPVHYPWPSEDQ 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,725
Number of Sequences: 5004
Number of extensions: 36942
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 2,362,478
effective HSP length: 68
effective length of query: 102
effective length of database: 2,022,206
effective search space: 206265012
effective search space used: 206265012
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)