Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000245-TA|BGIBMGA000245-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        31   0.66 
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      29   1.5  
SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)               29   2.7  
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_58845| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)                     27   6.2  
SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)                       27   6.2  
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)                27   6.2  
SB_21900| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_54414| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   27   8.2  

>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 43  VPAAEGIPAQQHADYGYDH-NSGKIHPDTAKYAHLKTVDYVAKPDYTYA 90
           +P       QQ ADY  +H N+ +  P T +    ++ DY    D TYA
Sbjct: 917 MPQTTTTRTQQSADYATNHENTQRTMPQTTRTRTQQSADYAINHDNTYA 965


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 24  GYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTV 79
           GY+   +     GQ ++   P  EG+P+Q++   GY     +  P  ++Y    T+
Sbjct: 624 GYAPQGYQPEYGGQSMQPPPPKTEGVPSQEYPP-GYGVEGQESQPPLSEYQQQPTI 678


>SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)
          Length = 512

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 24  GYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTVDYVA 83
           G  Y  F+G +     ++  P   GI    +    +   +G IHPD     H    D + 
Sbjct: 395 GIIYPDFTGIIYPDYTDIIYPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTD-II 453

Query: 84  KPDYT 88
            PDYT
Sbjct: 454 HPDYT 458



 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 24  GYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTVDYVA 83
           G  Y  F+G +     ++  P   GI    +    +   +G IHPD     H    D + 
Sbjct: 259 GIIYPDFTGIIYPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTD-II 317

Query: 84  KPDYT 88
            PDYT
Sbjct: 318 HPDYT 322


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 54   HADYGYDHNSGKIHPDTAKYAHLKTV 79
            H D GY H S +IH DT  Y   K +
Sbjct: 1879 HGDTGYYHTSKEIHGDTGYYDTSKEI 1904


>SB_58845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 19 TGKTGGYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIH 67
          +G+  G  + + SG V GQ+         G  + Q +  GY + SGK++
Sbjct: 10 SGQVSGKVFGQVSGKVFGQVSGQVSGQVSGQGSGQVSGKGYGNGSGKVY 58


>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 709

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 3/141 (2%)

Query: 16  PAFTGKTGGYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAH 75
           P     +G ++Y RF          +     EG   + + +   +  +GK +   A+  H
Sbjct: 113 PLIPEDSGNHAYRRFLDFFRASCGGIH--GREGTEGKLNRNRKPEQGTGKRNMMLAETRH 170

Query: 76  LKTVDYVAKPDYTYAYGVEDPHTGNLQNHK-EQRDGDVVRGEYSLVEPDGSVRLVRYTAD 134
              V     P  +  +   +    +  N + + R     RG YS   P+      +    
Sbjct: 171 THAVPSSQAPALSSRHRKPEIKKSHSPNKRLKTRCLHACRGSYSGSNPEAKTEKKKREFR 230

Query: 135 PKNGFQAVVHKKAGGQAQAPV 155
           P+N    V+H+ A G+ +  V
Sbjct: 231 PRNRILTVMHRAASGRLECRV 251


>SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)
          Length = 594

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 53  QHADYGYDHNSGKIHPDTAKYAHLKTVDYVAKPDYTYAYGVEDP 96
           Q  DY +D   G +     K+ HLK + YV +  YT+ +  E+P
Sbjct: 337 QSLDYAFDDKEGILRYRPPKHDHLKEM-YVTQ--YTHNFDSEEP 377


>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
          Length = 901

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 108 RDGDVVRGEYSLVEPDGSVRL-VRYTADPKNGFQAVVHKKAGGQAQAPV-HYGHPK 161
           +DG + R EY  +  DG ++L + YTAD K     +  + +      P+ H GH K
Sbjct: 609 QDGVLTRQEYRTLVVDGKLQLIINYTADIKEKAPRMRTRLSNTAFLDPLEHVGHRK 664


>SB_21900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 67  HPDTAKYAHLKTVDYVAKPDYTYAYGVEDPHTGNLQNHKEQRDG 110
           HP   +Y+  +  D     DY+ A   E P + N Q+   QR G
Sbjct: 140 HPSPPRYSMPERSDRAMVYDYSQARAYEAPASKNYQSSSRQRVG 183


>SB_54414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 80  DYVAKPDYTYAYGVEDPHTGNL---QNHKEQRDGDVVRGEYSLVEPDGSV 126
           ++ A PD      +ED HTGN    +NH +    DV    Y  + PD  V
Sbjct: 59  NHPASPDNDAGKPIED-HTGNDGDDENHDKCHHNDVADDAYDDIPPDSPV 107


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 14  ATPAFTGKTGGYSYNRFS-GPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAK 72
           AT +F   T  Y++   S   V+     V    A    +  HA   Y H +      T+ 
Sbjct: 211 ATSSFAHATSSYAHATSSFAHVTSSFAHVTSSYAHATSSYAHATSSYAHATSSFAHVTSS 270

Query: 73  YAHLKTVDYVAKPDYTY 89
           +AH+ T    A   Y +
Sbjct: 271 HAHVTTSYAHATSSYAH 287


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 109 DGDVVRGEYSLVEPDGSVRLVRYTADPKNGFQAVVHKKAG-GQAQAPVHYGHPKQDEDDS 167
           DG+ +    +  +PDG  +++ Y  +  N  +AV H + G G AQ       PK    D 
Sbjct: 65  DGNQIETMENFFKPDGLQKIMFYYQETDNIPEAVEHVRLGPGGAQRTTIKTKPKVFVTDG 124

Query: 168 ND 169
            D
Sbjct: 125 KD 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,715,614
Number of Sequences: 59808
Number of extensions: 291928
Number of successful extensions: 390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 19
length of query: 170
length of database: 16,821,457
effective HSP length: 77
effective length of query: 93
effective length of database: 12,216,241
effective search space: 1136110413
effective search space used: 1136110413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)