Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000245-TA|BGIBMGA000245-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78130.1 68414.m09105 transporter-related low similarity to s...    32   0.23 
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    29   1.7  
At5g19120.1 68418.m02275 expressed protein low similarity to ext...    27   5.0  

>At1g78130.1 68414.m09105 transporter-related low similarity to
           spinster type III [Drosophila melanogaster] GI:12003974;
           contains Pfam profile: PF00083 major facilitator
           superfamily protein
          Length = 490

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 2   AFLFKIFVAILLATPAFTGKTGGYSYNRFSGPVSGQIVEVQVPAAEGIP 50
           AFL  +FVA       F GK G +   R   P SG+I+  Q+ +A  IP
Sbjct: 263 AFLMGLFVAASSLGGLFGGKMGDFLSTRL--PNSGRIILAQISSASAIP 309


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 34  VSGQIVEVQVPAAEGIPAQ-QHADYGYDHNSGKIHPDTAKYAHLKTVD 80
           ++G ++  ++P   G+  + QH + GY+H +G I  + A  ++LK  D
Sbjct: 208 LAGNVLGGKLPPRLGLLTELQHMEIGYNHFNGNIPSEFALLSNLKYFD 255


>At5g19120.1 68418.m02275 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}
          Length = 386

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 12  LLATPAFTGKTGGYSYNRFSGPVSGQIVEVQVPAA 46
           L+ TP  TG +G Y  N  S  V+G+ + V+ P A
Sbjct: 223 LVYTPLLTGSSGNYVINVKSIRVNGEKLSVEGPLA 257


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,679,222
Number of Sequences: 28952
Number of extensions: 201709
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 12,070,560
effective HSP length: 76
effective length of query: 94
effective length of database: 9,870,208
effective search space: 927799552
effective search space used: 927799552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)