GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000245-TA|BGIBMGA000245-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0889 - 22316945-22317062,22317149-22318794                       29   1.5  
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    29   2.6  
02_02_0074 + 6567362-6567550,6567685-6567753,6567869-6567970,656...    28   3.4  
06_01_0601 + 4337575-4340149,4340566-4340978                           27   6.0  
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609...    27   8.0  

>07_03_0889 - 22316945-22317062,22317149-22318794
          Length = 587

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 13  LATPAFTGKTGGYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAK 72
           LA  A  G  GG  +   +G V G +VE    A+E +P  Q   YG     GK+   +  
Sbjct: 57  LADIATGGGEGGEGHGALAG-VLGAVVETAREASELVPRSQGRHYG----GGKLRLRSDL 111

Query: 73  YAHLKTVD-YVAKPDYTYAYG 92
                T+D  VA+ D  YA G
Sbjct: 112 DVVAGTLDALVARVDEVYASG 132


>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 59  YDHNSGKIHPDTAKYAHLKTVDYVAKPDYTYAYGVEDPHTGNLQNHKEQRDGDVVRGEYS 118
           Y  ++G   P  +  + LK +  +   D  +   + D   G+L N ++ R GD+V G  S
Sbjct: 221 YTDSAGLSGPFPSTLSRLKNLKLLRASDNNFTGTIPD-FIGSLSNLEDLRIGDIVNGSSS 279

Query: 119 L 119
           L
Sbjct: 280 L 280


>02_02_0074 +
           6567362-6567550,6567685-6567753,6567869-6567970,
           6568386-6568627,6569057-6569195,6569298-6569333,
           6569838-6569972,6570315-6570547,6571204-6571298,
           6571331-6571374,6571808-6571888
          Length = 454

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 32  GPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPD 69
           G +S   +E  +   +GIP +    Y Y H S  + PD
Sbjct: 168 GCISATPIEKPIDIVDGIPLEMPLAYFYGHPSPSVSPD 205


>06_01_0601 + 4337575-4340149,4340566-4340978
          Length = 995

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 12  LLATPAFTGKTGGYSYNRFSGPVSGQ 37
           L A+PA   +   +SYN+FSG VSG+
Sbjct: 532 LQASPAL--RYANFSYNKFSGEVSGE 555


>01_03_0050 +
           11959421-11959736,11959892-11959960,11960641-11960979,
           11961090-11961152,11962472-11962962,11963773-11964441
          Length = 648

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 100 NLQNHKEQRDGDVVRGEYSLVEPDGSVRLVRYTADPKNGFQAVVHKKA 147
           N+ + +E +    V    S   PD    +  Y+++ K+G +   HKKA
Sbjct: 362 NILSKEEDKPAHAVISTLSKRAPDCQTEVTMYSSEEKSGERCQSHKKA 409


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,954,246
Number of Sequences: 37544
Number of extensions: 263303
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 5
length of query: 170
length of database: 14,793,348
effective HSP length: 77
effective length of query: 93
effective length of database: 11,902,460
effective search space: 1106928780
effective search space used: 1106928780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)