GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000245-TA|BGIBMGA000245-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF000261-9|AAB52923.3|  200|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC006730-7|AAF60473.1|  487|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK180.5b protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 31  SGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTVDYVAKPDYTYA 90
           S PV+ Q+ E  +PAA+    ++ +  GY+  +  +      Y   +  +   +P+    
Sbjct: 417 SAPVAPQVTEYPIPAAQTEAPEEESKPGYEQTAPAVETKEESYDEQEAEETHVEPEQPAV 476

Query: 91  YG 92
            G
Sbjct: 477 VG 478


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 95  DPHTGNLQNHKEQRDGDVVRGEYSLVEPDG 124
           +P  G  Q HKE RD    RG+   VE  G
Sbjct: 309 EPEKGRKQEHKESRDRRPARGDSGEVEKRG 338


>AF000261-9|AAB52923.3|  200|Caenorhabditis elegans Hypothetical
           protein F19B10.2 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 71  AKYAHLKTVDYVAKPDYTYAYGVEDPHTGNLQNHKEQRDGDVVRGEYSLVEPDGSVRLVR 130
           A+Y HLK V  +AK      Y  E   T +  N K +R+   ++ E  L   D  + + +
Sbjct: 33  AEYEHLKKVTELAKMTKNRDYMTECEATSHAVNVKLERENKKLKDE--LARKDAEIMMQK 90

Query: 131 YTADPKNG 138
            + D   G
Sbjct: 91  ESGDGGGG 98


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 25  YSYNRFSGPVSGQIVE--------VQVPAAEGIPAQQHADYGYDHN 62
           ++Y+  +GPV+ Q++E        VQ    E IP   H+ + + H+
Sbjct: 106 HNYHFHTGPVNNQVIEQHYNHHNHVQQTFEENIPQGPHSSFNFSHD 151


>AC006730-7|AAF60473.1|  487|Caenorhabditis elegans Hypothetical
           protein Y27F2A.6 protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 83  AKPDYTYAYGVEDPHTGNLQNHKEQRDGDVVRGEYSLVEPDGS-VRLVRYTADPKN 137
           AK   TY +  +DP   N    K   D   +  + S++EP GS V L     + KN
Sbjct: 62  AKSGKTYNFCYKDPQNANSVGKKFSCDHLPILEKLSILEPSGSFVDLTDVAENSKN 117


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,884,033
Number of Sequences: 27539
Number of extensions: 214721
Number of successful extensions: 318
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 5
length of query: 170
length of database: 12,573,161
effective HSP length: 76
effective length of query: 94
effective length of database: 10,480,197
effective search space: 985138518
effective search space used: 985138518
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)