GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000245-TA|BGIBMGA000245-PA|IPR000618|Insect cuticle
protein
         (170 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.9  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    21   4.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 119 LVEPDGSVRLVRYTADPKNGFQAVVHKKAG 148
           L E DG+  L R   D  +GF   VH   G
Sbjct: 57  LAEFDGTTVLCRVCGDKASGFHYGVHSCEG 86


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 92  GVEDPHTGNLQNHKEQRDGDVVRGEYSLVEP 122
           GV      N Q H  +R GDV      ++EP
Sbjct: 585 GVYTCSARNKQGHSARRSGDVAVIVPPIIEP 615


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 121 EPDGSVRLVRYTADPKNGFQAVVHKKAG 148
           E DG+  L R   D  +GF   VH   G
Sbjct: 1   EFDGTTVLCRVCGDKASGFHYGVHSCEG 28


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,341
Number of Sequences: 429
Number of extensions: 2387
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 170
length of database: 140,377
effective HSP length: 54
effective length of query: 116
effective length of database: 117,211
effective search space: 13596476
effective search space used: 13596476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)