Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000244-TA|BGIBMGA000244-PA|IPR000061|SWAP/Surp,
IPR000467|D111/G-patch, IPR006569|Regulation of nuclear pre-mRNA
protein
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 57 1e-08
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 38 0.006
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 38 0.006
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 35 0.052
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 34 0.069
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 33 0.16
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 33 0.21
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.28
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 31 0.48
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 30 1.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 2.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 2.0
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 29 2.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 2.6
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 3.4
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 29 3.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 3.4
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 28 4.5
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 28 4.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 4.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 6.0
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 28 6.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 7.9
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 27 7.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 7.9
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 27 7.9
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 12 LRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVT 61
+R IIDK A +VARNGP FE+ + ++ N KF+FL+ + Y YYQ+K+T
Sbjct: 41 IREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYYQHKLT 91
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 740 STNKGHQMLQKMGWSAG-GLGASGQGIAEPI 769
+ KG Q+L+ MGWS G GLG+ QG+ +P+
Sbjct: 145 NNGKGKQLLEMMGWSRGKGLGSENQGMVDPV 175
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/32 (53%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 739 DSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI 769
++T G +ML+KMG+ G GLGA+ +GIAEP+
Sbjct: 114 NTTGFGAKMLEKMGYKQGQGLGANAEGIAEPV 145
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 34.7 bits (76), Expect = 0.052
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 309 SKSNYFETAVIEKMKSPTSSYQDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVGH 368
+ +N T+ E M S SS ++ + N S NY + + G+
Sbjct: 529 TSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNN----NNNNNSNSGNYNNNNS---GN 581
Query: 369 TMQQIQQLEMQKHALEMQKTXXXXXXXXXSNMGNFHNSNFSDIGYPQMGGYDQNFNANSN 428
QQ QQ +L+ + SN N++N+N + G +QN+N N+N
Sbjct: 582 NNQQHQQ---SSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYG----NNNNQNYNNNNN 634
Query: 429 SQQYGSESG 437
S Q G+ G
Sbjct: 635 SSQGGNSQG 643
Score = 34.3 bits (75), Expect = 0.069
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 421 QNFNANSNSQQYGSESGDNYPTNNSISGNENS 452
QN+N N+N+Q YG+ + NY NN+ S NS
Sbjct: 611 QNYN-NNNNQNYGNNNNQNYNNNNNSSQGGNS 641
Score = 33.9 bits (74), Expect = 0.091
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 398 SNMGNFHNSNFSDIGYPQ------MGGYDQNF----NANSNSQQYGSESGDNYPTNNSIS 447
SN GN++N+N + + G +F + NSN Q Y + + NY NN+ +
Sbjct: 569 SNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQN 628
Query: 448 GNENSYDSQ 456
N N+ SQ
Sbjct: 629 YNNNNNSSQ 637
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 34.3 bits (75), Expect = 0.069
Identities = 34/193 (17%), Positives = 76/193 (39%), Gaps = 2/193 (1%)
Query: 294 EEQEAKLNKLLRLWESKSNYFETAVIEKMKSPTSSYQDYQNALISQHANAISHLTQQTKS 353
E+++ LNK + +S+ + +T+ EK P Q ++ + + A ++H + K
Sbjct: 48 EDEDQILNKEKKEGQSEDMFSDTSEDEKRTLPNDEAQKRRDFIENGDAERLAHKGLRNKE 107
Query: 354 TFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQKTXXXXXXXXXSNMGNFHNSNFSDIGY 413
+ ++ + + +E Q+ + S + +F+
Sbjct: 108 VLNDDSDDEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSSPKRMSFNLKED 167
Query: 414 PQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPD 473
+ G +D+N N + Y ES + N S+S ++ ++ EQ K+ + + +
Sbjct: 168 MEEGDFDEN--GNFIRKNYDPESQYDAWLNGSVSNKKSIAAAREAEQKRKEMENRRRNQE 225
Query: 474 LSNLPNVNFSVPP 486
L + FS P
Sbjct: 226 LEEFSKLPFSTVP 238
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 582 PNHERPRDNEGWEKLGLYEYYKAKNSARKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPP 641
P E+ + E +K E Y AK +A+K KE+A +K+K SP+ + ++K T P
Sbjct: 24 PKTEKELERER-QKAAKLEKYHAKLAAKKAKEEARKPKLDKKAKIASPVAEYVEK--TTP 80
Query: 642 GRR 644
G +
Sbjct: 81 GEK 83
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 425 ANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLP----NV 480
+ S++ Y N S+ ++ D ++F Q +K+ K++++ P N+P
Sbjct: 164 SQSHTSSYDQSPKGQLRDNISVPNQQDGLDPEVFNQQSKETKKSLQVPPSRNVPPPVTRP 223
Query: 481 NFSVPPPGFKPLDNAPLQAF 500
N P P F P Q F
Sbjct: 224 NQYNPEPNFSLSSGYPQQHF 243
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 32.3 bits (70), Expect = 0.28
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 398 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQ- 456
++ N NSN Y Q+G N + N+ + ES Y SIS NE + ++
Sbjct: 32 TSSSNSENSNIQGKHYTQVGEDADNSFISENTPKNTFESTQTYENLESISKNEPTSEASK 91
Query: 457 -IFEQIAKQKKENIEDPDLSNLPNVNFSVPP-PGFKPLDNAPL 497
+ ++ ++ E P LPN P PG PL + P+
Sbjct: 92 PLLNELVPEEPLPREPP----LPNEPVPEEPLPGEPPLPDEPV 130
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 31.5 bits (68), Expect = 0.48
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 405 NSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQ 464
N + ++ GYP G N + N+N E D P +N N++S +S E+ +Q
Sbjct: 13 NGDKNEDGYPAENGEGTNVDDNNN-----EEEKDGIPLDNDNDENDSSEESATDEEAERQ 67
Query: 465 KKEN--IEDPD 473
+E +ED +
Sbjct: 68 VREGFIVEDEE 78
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 586 RPRDNEGWEKLGLYEYYKAKNSARKMKEDAIAQGYRQKSKSPSPI---PKDLQKQPTPPG 642
+P + E ++ L + K + KE+ I++ R S+S SP+ P+ + QP P
Sbjct: 151 KPGEPEVKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPE 210
Query: 643 RRYRSRSK 650
++ +S K
Sbjct: 211 KKEKSEKK 218
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 740 STNKGHQMLQKMGWSAG-GLGASGQGIAEPI 769
++N +ML MGW+ G GLG + GI E I
Sbjct: 490 TSNVSMKMLNSMGWNKGSGLGTNENGIKEAI 520
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 289 SIAVTEEQEAKLNKLLRLWESKSNYFETAVIEKMKSPTSSYQDYQN 334
SI EE+ +L LWESKS+ ++ V + TS Y N
Sbjct: 273 SIKELEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNN 318
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 338 SQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQKTXXXXXXXXX 397
S +++ + ++KS ++Q+ H + + L + +++
Sbjct: 619 SVRSSSYNSTASESKSEITSHQNLHTIPINKPFTSDRPLYSSPNDT-LERVETGNQGQRM 677
Query: 398 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNS 445
+++GN + + DI + G +D N +N S G N P+N+S
Sbjct: 678 NSIGNASSFSKRDIMENENGSFDTNAKNGNNVDDSSSVRGMNLPSNSS 725
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 119 LAVNSAPPPLPQHPQEIDSITTQINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKA 178
L + + L + +++DS+ I LKE + +SE L ++V I+ L K
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREV-IDNL--KG 724
Query: 179 QMESLQIMADENNINLSELDNILQPIIDSCTKDS 212
+ E+L+ ++ + +LS+ N + TK S
Sbjct: 725 KHETLEAQRNDLHSSLSDAKNTNAILSSELTKSS 758
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 209 TKDSISSGKGWILQHATSHDAGKVISQHLLRKVTQTGAAFTQKLHIIYLVNDVLHHCARK 268
T++SI+ W++ H D I Q L + ++ + +KL ++YL+N+V+ K
Sbjct: 18 TQESITGIAHWVMFHKRYADE---IVQIWLEALYESSS--NKKLLLLYLLNEVVQQSRVK 72
Query: 269 NAEDLKKNLENVVVPMFCNASIAVTEEQEAKLNKLLRLW 307
+ + VV +A +V + K+ + +W
Sbjct: 73 KISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDVW 111
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 432 YGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLPNVNF 482
YG S D NN G + ++ + + + K+KK+ +++ D SN P+ F
Sbjct: 388 YGYLSVDTSDANNPTIGTVSGLEAAM-QDVLKEKKQEMKNIDPSNQPSDQF 437
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 282 VPMFCNASIAVTEEQEAKLNKLLRLWESKSNYFETAVIEKMKSPT---SSYQDYQNALIS 338
+P + S A T + +L + +N F TA MK+ + +SY+ Y + S
Sbjct: 3809 IPQSSSISEASTSNPNILSSTVLSFDSTITNSFTTASTSIMKTTSLNSNSYKWYNSTTQS 3868
Query: 339 QHANAISHLTQQTKSTFEN 357
+ NA S + STF N
Sbjct: 3869 VYYNATSSTVPWSNSTFRN 3887
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 738 IDSTNKGHQMLQKMGWSAG-GLG 759
I N G ++L+K+GW AG GLG
Sbjct: 650 ISKENPGRRLLEKLGWYAGKGLG 672
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 441 PTNNSISGNENSYDSQIFEQ-IAKQKKENIEDPDLSNLPNVNFSVPPPGFKP 491
P+ NS+ S D+ ++ Q ++ + P +S+ PN ++PPP P
Sbjct: 63 PSLNSVQQTPASIDAVASSSNVSLQSQQPLSKPVVSSKPNQTTAMPPPSNNP 114
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 4.5
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 130 QHPQEIDSITTQINVLKEQIT---QSENNLNAQHAVLI---QQQQVKINELVSKAQMESL 183
Q E+DS T + LK++IT Q+ + A+ L Q++Q+++ E V+K + SL
Sbjct: 436 QMQTELDSYITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNK--LTSL 493
Query: 184 QIMADENNINLSELDNILQ 202
Q +E + L E + LQ
Sbjct: 494 QEQNNEFDRQLKEQEEDLQ 512
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 398 SNMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQ----YG--SESGDNYPTNNSISGNEN 451
S + F NSN + Y Y + +++ + Q Y ++ D+ NN +E+
Sbjct: 178 SGLTKFGNSNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDES 237
Query: 452 SYDSQIFEQIAKQKKENIEDPDLSN 476
S S+ +E+ +E ED D +N
Sbjct: 238 SSGSESYERDEDVDEEEEEDDDENN 262
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 743 KGHQMLQKMGWSAGGLGASGQGIAEPIS 770
KG++++ MGW A GL A I IS
Sbjct: 94 KGYKVIHPMGWDAFGLPAENAAIENGIS 121
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 602 YKAKNSARKMKEDAIAQGYRQKSKSPSPIPK-DLQKQPTPPGRRYRSRSKTPEPN 655
Y AK S +K E +G Q +S SP+ K L PT S K P PN
Sbjct: 178 YAAKASIQKRYERLTKRGVDQAHES-SPVKKAKLDDYPTSSNEETISSVKPPSPN 231
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 27.5 bits (58), Expect = 7.9
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 130 QHPQEIDSITTQINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADE 189
Q+ +T IN +K +N + AV I+++ K L AQ + L AD
Sbjct: 57 QYSHNSKILTELINSVKRPNKPDQNE--EKSAVGIEEKSFKDEHL---AQKKGLHHFADL 111
Query: 190 NNINLSELDNILQPIIDSCTKDSISSGK 217
I L++ + L + D+ D+I SGK
Sbjct: 112 KEIFLNKNLSTLDGLQDASLHDNIQSGK 139
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 7.9
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 425 ANSNSQQYGSESG------DNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLP 478
A+S QY +E G D Y + S N D+ F + + N DP +L
Sbjct: 85 ASSGINQYSTEKGKFTRPSDEYESEYS-DYNAQPSDANNFYNLRGDGRYNAYDPSSDSLA 143
Query: 479 NVNFSVPPPGFKPLD 493
NV SV P G P D
Sbjct: 144 NVYNSV-PYGSSPYD 157
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 435 ESGDN--YPTNNSISGNENSY--DSQIFEQIAKQKKENIEDPDLS 475
ESG+N +P N S Y D+QI EQI K + + PDLS
Sbjct: 89 ESGENSDHPLNTSDDSKWKEYFDDNQILEQIDKDIRRTL--PDLS 131
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,364,799
Number of Sequences: 5004
Number of extensions: 137794
Number of successful extensions: 399
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 44
length of query: 816
length of database: 2,362,478
effective HSP length: 79
effective length of query: 737
effective length of database: 1,967,162
effective search space: 1449798394
effective search space used: 1449798394
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -