GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000244-TA|BGIBMGA000244-PA|IPR000061|SWAP/Surp,
IPR000467|D111/G-patch, IPR006569|Regulation of nuclear pre-mRNA
protein
         (816 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    30   0.087
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   2.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   3.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   4.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   5.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   5.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   10.0 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   10.0 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   10.0 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   10.0 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   10.0 

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 0.087
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 407 NFSDIGYPQMGGYDQNFNANSNSQQY-----GSESGDNYPTNNSISGNENSYDSQIFEQI 461
           NF+D+ +  +G    +   N+   +Y     G+++ DN   +N  + N+N+ +    +Q 
Sbjct: 397 NFNDVNFRILGANVDDLMRNTRCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQN 456

Query: 462 AKQKKENIEDPDLSN 476
             ++ +N ++ +  N
Sbjct: 457 GNRQNDNRQNDNKQN 471



 Score = 28.7 bits (61), Expect = 0.20
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 421 QNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSNLPNV 480
           QN N  ++++Q G+   DN    N  +GN+ + + Q   +    K+      D  N  N 
Sbjct: 470 QNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQND 529

Query: 481 N 481
           N
Sbjct: 530 N 530



 Score = 28.3 bits (60), Expect = 0.27
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 401 GNFHNSNFSDIGYPQMGGYDQNFN-ANSNSQ----QYGSESGDNYPTNNSISGNENSYDS 455
           G +HN N  +         +QN N  N+++Q    Q G+   DN   +N  +GN  + + 
Sbjct: 420 GRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNK 479

Query: 456 Q 456
           Q
Sbjct: 480 Q 480



 Score = 28.3 bits (60), Expect = 0.27
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 402 NFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQ 456
           N +N N  +    +  G  QN N  ++++Q G+   DN    N  + N+ + + Q
Sbjct: 441 NANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQ 495



 Score = 26.6 bits (56), Expect = 0.81
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 399 NMGNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENS 452
           N  N +  N +     +  G  QN N  ++++Q G+   DN    N  + N+N+
Sbjct: 473 NRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNN 526



 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 424 NANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLSN 476
           N N+ +Q   +++ DN   NN  + N+N+       Q   ++ +N ++ +  N
Sbjct: 424 NQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQN 476



 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 401 GNFHNSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQI 457
           GN  N N  + G  Q G    +   N N Q     +G+    N +   + N  D+Q+
Sbjct: 482 GNRQNDNKQN-GNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQV 537



 Score = 23.8 bits (49), Expect = 5.7
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 415 QMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDL 474
           Q  G     N N+++Q   +++ DN   N      +N       +Q   ++ +N ++ + 
Sbjct: 425 QNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNR 484

Query: 475 SN 476
            N
Sbjct: 485 QN 486


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 405 NSNFSDIGYPQMGGYDQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQ 464
           NSN S I          N N N+N+    +   ++    N  S N N+ D  +F      
Sbjct: 222 NSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD--MFCHTGLG 279

Query: 465 KKENIEDPDLSNLPNVNFSVPP 486
              +  DP   +LP      PP
Sbjct: 280 HYGHHPDPGEVDLPPETQPTPP 301


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 420 DQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQI 461
           D+     S  ++  S   +NY +N S   N+N+Y+ +++  I
Sbjct: 69  DKRERERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYNI 110


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 357 NYQSQHQAFVGHTMQQIQQLEMQKHALEMQ 386
           +Y+S+ + FV +TM QI+++    +  E+Q
Sbjct: 132 HYRSKRRGFVYYTMGQIREVARHFYHKELQ 161


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 420 DQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQI 461
           D+     S  ++  S   +NY +N S   N N+Y+ +++  I
Sbjct: 69  DKRERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNI 110


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 420 DQNFNANSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQI 461
           D+     S  ++  S   +NY +N S   N N+Y+ +++  I
Sbjct: 307 DKTERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNI 348


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 591 EGWEKLGLYEYYKAKNSARKMKEDAIAQGYRQKSK 625
           +G   +G Y   K      K KED I +G   K+K
Sbjct: 194 KGRGAIGAYGPEKGPKVPEKKKEDEIDEGKESKTK 228


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 11/62 (17%), Positives = 30/62 (48%)

Query: 261 VLHHCARKNAEDLKKNLENVVVPMFCNASIAVTEEQEAKLNKLLRLWESKSNYFETAVIE 320
           V    A+  A  L     +++ P F + +  + +E+  ++ +L+R +  +SN  +   ++
Sbjct: 347 VAEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIRNYYFESNKIDETTLK 406

Query: 321 KM 322
            +
Sbjct: 407 HL 408


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 136 DSITTQINVLKEQITQSENNLNAQHAVLIQQQQVKINE 173
           D  T ++N+LK  + Q + +   ++AV +   QV  ++
Sbjct: 124 DVPTWEVNILKSIVGQLQVDTQGENAVKVNSVQVPTDD 161


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 757 GLGASGQGIAEPISGG 772
           G GASG G AE +S G
Sbjct: 597 GSGASGSGSAENLSSG 612


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 11/62 (17%), Positives = 30/62 (48%)

Query: 261 VLHHCARKNAEDLKKNLENVVVPMFCNASIAVTEEQEAKLNKLLRLWESKSNYFETAVIE 320
           V    A+  A  L     +++ P F + +  + +E+  ++ +L+R +  +SN  +   ++
Sbjct: 347 VAEFIAKPEALKLLDENWDLIAPYFLDYNYTIPKEKHVEVARLIRNYYFESNKIDETTLK 406

Query: 321 KM 322
            +
Sbjct: 407 HL 408


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,812
Number of Sequences: 429
Number of extensions: 10407
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 21
length of query: 816
length of database: 140,377
effective HSP length: 63
effective length of query: 753
effective length of database: 113,350
effective search space: 85352550
effective search space used: 85352550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)