Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000244-TA|BGIBMGA000244-PA|IPR000061|SWAP/Surp,
IPR000467|D111/G-patch, IPR006569|Regulation of nuclear pre-mRNA
protein
(816 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 75 3e-13
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 75 3e-13
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 75 3e-13
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 54 5e-07
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 54 5e-07
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 53 9e-07
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp... 52 1e-06
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 48 3e-05
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 47 4e-05
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 45 2e-04
At4g16200.1 68417.m02459 SWAP (Suppressor-of-White-APricot)/surp... 45 2e-04
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 40 0.007
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 40 0.007
At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp... 38 0.035
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 37 0.047
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 37 0.047
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 37 0.047
At3g52350.1 68416.m05754 D111/G-patch domain-containing protein ... 36 0.082
At5g08535.2 68418.m01015 D111/G-patch domain-containing protein ... 36 0.11
At5g08535.1 68418.m01014 D111/G-patch domain-containing protein ... 36 0.11
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 36 0.11
At3g60380.1 68416.m06753 expressed protein 35 0.25
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 34 0.33
At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506) ... 34 0.44
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 33 0.58
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.76
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.76
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 32 1.3
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ... 32 1.3
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 32 1.8
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 31 2.3
At1g15780.1 68414.m01893 expressed protein 31 2.3
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi... 31 2.3
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 31 4.1
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 31 4.1
At5g06265.1 68418.m00701 hyaluronan mediated motility receptor-r... 30 5.4
At1g78815.1 68414.m09187 expressed protein contains Pfam profile... 30 5.4
At1g62220.1 68414.m07018 expressed protein 30 5.4
At5g07970.1 68418.m00926 dentin sialophosphoprotein-related cont... 30 7.1
At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp... 30 7.1
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 30 7.1
At3g15340.1 68416.m01936 expressed protein 30 7.1
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 30 7.1
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 9.4
At1g55080.1 68414.m06291 expressed protein 29 9.4
At1g31870.1 68414.m03917 expressed protein 29 9.4
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 29 9.4
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 74.5 bits (175), Expect = 3e-13
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 4 PQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYK 59
P PP D +L+ IDKL ++ +NGPEFE M +++QK+NP ++FL+GGE YY+YK
Sbjct: 118 PPPPADPELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYK 173
Score = 39.9 bits (89), Expect = 0.007
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 209 TKDSISSGKGWILQHATSHDAGKVISQHLLRKVTQTGAAFTQKLHIIYLVNDVLHHCARK 268
TK+SI S K W +Q + A +++ L +V + Q +HI+YL ND+L ++
Sbjct: 285 TKESIKSAKIWFMQRSPFAPA---LAEALRDRVFAMDDSDRQ-MHIVYLANDILFDSLQR 340
Query: 269 NAEDLKKNLENVVVPMFCNASIA-------VTEEQEAKLNKLLRLWESKSNYFETAV--I 319
+ + E + + + EE +++L K+L+ W SK + + + +
Sbjct: 341 RTNLHEFDNEALAFRPILGSMLGRIYHFPQNKEENQSRLEKILQFWASKEVFDQDTISSL 400
Query: 320 EK-MKSPTSSYQDYQNALISQHANAISHLTQQ 350
EK MKS + + +I+ HA + QQ
Sbjct: 401 EKEMKSGPPANTFSHSPIIAAHALQRPGMLQQ 432
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 74.5 bits (175), Expect = 3e-13
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 4 PQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYK 59
P PP D +L+ IDKL ++ +NGPEFE M +++QK+NP ++FL+GGE YY+YK
Sbjct: 118 PPPPADPELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYK 173
Score = 39.9 bits (89), Expect = 0.007
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 209 TKDSISSGKGWILQHATSHDAGKVISQHLLRKVTQTGAAFTQKLHIIYLVNDVLHHCARK 268
TK+SI S K W +Q + A +++ L +V + Q +HI+YL ND+L ++
Sbjct: 285 TKESIKSAKIWFMQRSPFAPA---LAEALRDRVFAMDDSDRQ-MHIVYLANDILFDSLQR 340
Query: 269 NAEDLKKNLENVVVPMFCNASIA-------VTEEQEAKLNKLLRLWESKSNYFETAV--I 319
+ + E + + + EE +++L K+L+ W SK + + + +
Sbjct: 341 RTNLHEFDNEALAFRPILGSMLGRIYHFPQNKEENQSRLEKILQFWASKEVFDQDTISSL 400
Query: 320 EK-MKSPTSSYQDYQNALISQHANAISHLTQQ 350
EK MKS + + +I+ HA + QQ
Sbjct: 401 EKEMKSGPPANTFSHSPIIAAHALQRPGMLQQ 432
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 74.5 bits (175), Expect = 3e-13
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 4 PQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYK 59
P PP D +L+ IDKL ++ +NGPEFE M +++QK+NP ++FL+GGE YY+YK
Sbjct: 118 PPPPADPELQKRIDKLVEYSVKNGPEFEAMMRDRQKDNPDYAFLFGGEGHGYYRYK 173
Score = 39.9 bits (89), Expect = 0.007
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 209 TKDSISSGKGWILQHATSHDAGKVISQHLLRKVTQTGAAFTQKLHIIYLVNDVLHHCARK 268
TK+SI S K W +Q + A +++ L +V + Q +HI+YL ND+L ++
Sbjct: 285 TKESIKSAKIWFMQRSPFAPA---LAEALRDRVFAMDDSDRQ-MHIVYLANDILFDSLQR 340
Query: 269 NAEDLKKNLENVVVPMFCNASIA-------VTEEQEAKLNKLLRLWESKSNYFETAV--I 319
+ + E + + + EE +++L K+L+ W SK + + + +
Sbjct: 341 RTNLHEFDNEALAFRPILGSMLGRIYHFPQNKEENQSRLEKILQFWASKEVFDQDTISSL 400
Query: 320 EK-MKSPTSSYQDYQNALISQHANAISHLTQQ 350
EK MKS + + +I+ HA + QQ
Sbjct: 401 EKEMKSGPPANTFSHSPIIAAHALQRPGMLQQ 432
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 53.6 bits (123), Expect = 5e-07
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 738 IDSTNKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDPY----E 793
I S+N G ++LQKMGW GLG QGI EPI G +RDR+ G+G D Y E
Sbjct: 64 ISSSNVGFRLLQKMGWKGKGLGKQEQGITEPIKSG-IRDRR---LGLGKQEEDDYFTAEE 119
Query: 794 NFRKNKGAAFISRMKERALER 814
N ++ K I +E A +R
Sbjct: 120 NIQRKKLDIEIEETEEIAKKR 140
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 53.6 bits (123), Expect = 5e-07
Identities = 34/81 (41%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 738 IDSTNKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDPY----E 793
I S+N G ++LQKMGW GLG QGI EPI G +RDR+ G+G D Y E
Sbjct: 64 ISSSNVGFRLLQKMGWKGKGLGKQEQGITEPIKSG-IRDRR---LGLGKQEEDDYFTAEE 119
Query: 794 NFRKNKGAAFISRMKERALER 814
N ++ K I +E A +R
Sbjct: 120 NIQRKKLDIEIEETEEIAKKR 140
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 52.8 bits (121), Expect = 9e-07
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 11 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVTTEQA 65
D+R I++K AQFV++NG EFEK + N KF+FL + Y +YQ+K+T +A
Sbjct: 67 DIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSSDPYHAFYQHKLTEYRA 122
Score = 39.9 bits (89), Expect = 0.007
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 1 MELPQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL 47
+ LP+ ++L +II AQFVARNG F N++ NNP+F F+
Sbjct: 180 VRLPEGITGEEL-DIIKLTAQFVARNGKSFLTGLSNRENNNPQFHFM 225
>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein contains Pfam profiles
PF01585: G-patch domain, PF01805: Surp module
Length = 443
Score = 52.4 bits (120), Expect = 1e-06
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 4 PQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEY--FNYYQYKVT 61
P PP D ++ + DKLA FVA++G FE +T+ K + F FL+ + YY +++
Sbjct: 131 PPPPSDPTVKKVADKLASFVAKHGRPFEHITRQKNPGDTPFKFLFDENCADYKYYVFRLA 190
Query: 62 TEQAIL 67
E+ ++
Sbjct: 191 EEEKLI 196
Score = 46.0 bits (104), Expect = 1e-04
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 738 IDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDRQDQYKGVGVSL-------N 789
I + N GH++L KMGW G G+G+S +G+A+PI G V+ GVG S +
Sbjct: 358 IQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNN---LGVGASAPGEVKPED 414
Query: 790 DPYENFRK 797
D YE ++K
Sbjct: 415 DIYEQYKK 422
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 48.0 bits (109), Expect = 3e-05
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 11 DLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYG-GEYFNYYQYKVT 61
++R I++ AQFV++NG F K ++ NN FSFL Y +Y+YKVT
Sbjct: 66 EIRKIVETTAQFVSQNGLAFGNKVKTEKANNANFSFLKSDNPYHGFYRYKVT 117
Score = 35.9 bits (79), Expect = 0.11
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 1 MELPQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL 47
+ LP+ + +L +II AQFVARNG F + ++ NN +F F+
Sbjct: 171 VRLPEGIMEAEL-DIIKHTAQFVARNGQSFLRELMRREVNNSQFQFM 216
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 47.2 bits (107), Expect = 4e-05
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2 ELPQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVT 61
E+P PP D +L+ +I+ A FV+R G +E +++ K ++N F FL G +YY ++
Sbjct: 393 EVP-PPADNNLKLLIEGFATFVSRCGKLYEDLSREKNQSNQLFDFLREGNGHDYYARRLW 451
Query: 62 TEQ 64
EQ
Sbjct: 452 EEQ 454
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 45.2 bits (102), Expect = 2e-04
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 733 TTSGGIDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPISGGFVRDRQDQYKGVGVSLNDP 791
T ID +N G++ML+ MGW G GLG G G+ EP+ V D+ G+G
Sbjct: 1019 TEERAIDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPVQAQGV----DRRAGLGSQQKKV 1074
Query: 792 YENFRKNKGAAFISRMKERALER 814
F G + + + ++AL R
Sbjct: 1075 DAEFEVQPGDTYRTLLHKKALAR 1097
>At4g16200.1 68417.m02459 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam profile:
PF01805 surp module
Length = 288
Score = 44.8 bits (101), Expect = 2e-04
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1 MELPQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL--YGGEYFNYYQY 58
ME+ PP D R ++DK AQFV++ G EFE + + KF+FL YY++
Sbjct: 12 MEIITPPADIGTRTLVDKAAQFVSKKGLEFETKIIDSYPTDAKFNFLRSTADPCHTYYKH 71
Query: 59 KV 60
K+
Sbjct: 72 KL 73
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 39.9 bits (89), Expect = 0.007
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 7 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLY--GGEYFNYYQYKV 60
P+D+ LR++ID LA +V FE+ + + NP F F++ G + YY +++
Sbjct: 321 PEDEHLRHVIDTLALYVLDGECAFEQAIMERGRGNPLFKFMFELGSKEHTYYVWRL 376
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 39.9 bits (89), Expect = 0.007
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 7 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLY--GGEYFNYYQYKV 60
P+D+ L+ IID +A V G FE+ + + NP F+FL+ G + YY +++
Sbjct: 328 PEDEHLKQIIDTMALNVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 383
>At1g18050.1 68414.m02232 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein weak similarity to
spliceosome-associated-protein 114 [Echinococcus
multilocularis] GI:11602721; contains Pfam profile
PF01805: Surp module
Length = 285
Score = 37.5 bits (83), Expect = 0.035
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 13 RNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGE-YFNYYQYKVTTEQ 64
R D A+ V GPE E+ NPK+SF + + Y YYQ K+ Q
Sbjct: 151 RYYADSSARLVFMEGPEMERKMMTSYAGNPKYSFFWSSDRYHAYYQKKLAGYQ 203
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 37.1 bits (82), Expect = 0.047
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 7 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQAI 66
P + L II + + FV+++G + E + + KQ +NP F FL + + Y + Q +
Sbjct: 145 PPTEKLHQIITRTSSFVSKHGGQSEIVLRVKQGDNPTFGFLMPDHHLHLYFRFLVDHQEL 204
Query: 67 L 67
L
Sbjct: 205 L 205
Score = 35.1 bits (77), Expect = 0.19
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 1 MELPQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKV 60
+EL +++ +IDK+ F+ +NG E E + F FL ++ Y KV
Sbjct: 324 LELQIVEPTTEMKRVIDKIVDFIQKNGKELEATLVAQDVKYGMFPFLRPSSLYHAYYRKV 383
Query: 61 TTEQAILK 68
E LK
Sbjct: 384 LQEAEELK 391
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 37.1 bits (82), Expect = 0.047
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 7 PQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKVTTEQAI 66
P + L II + + FV+++G + E + + KQ +NP F FL + + Y + Q +
Sbjct: 145 PPTEKLHQIITRTSSFVSKHGGQSEIVLRVKQGDNPTFGFLMPDHHLHLYFRFLVDHQEL 204
Query: 67 L 67
L
Sbjct: 205 L 205
Score = 35.1 bits (77), Expect = 0.19
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 1 MELPQPPQDQDLRNIIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFLYGGEYFNYYQYKV 60
+EL +++ +IDK+ F+ +NG E E + F FL ++ Y KV
Sbjct: 324 LELQIVEPTTEMKRVIDKIVDFIQKNGKELEATLVAQDVKYGMFPFLRPSSLYHAYYRKV 383
Query: 61 TTEQAILK 68
E LK
Sbjct: 384 LQEAEELK 391
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 37.1 bits (82), Expect = 0.047
Identities = 51/259 (19%), Positives = 113/259 (43%), Gaps = 19/259 (7%)
Query: 133 QEIDSITTQINVLKEQITQSENNLNAQHAVLIQQ--QQVKINELVSKAQMESLQIMADEN 190
++ S T+ L E+ E + L + Q + + E + ++ E+ +++AD N
Sbjct: 338 EDFSSRDTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLSLQEELDQSSAEN-ELLADTN 396
Query: 191 N---INLSELDNILQPIIDSCTK--DSISSGKGWILQHATSHDAGKVISQHLLRKVTQTG 245
N I + EL+ L ++ + + + ++ SH+ VI +H + + +G
Sbjct: 397 NQLKIKIQELEGYLDSEKETAIEKLNQKDTEAKDLITKLKSHE--NVIEEHKRQVLEASG 454
Query: 246 AAFTQKLHIIYLVNDVLHHCARKNAEDLKK-NLENVVVPMFCNASIA----VTEEQEAKL 300
A T+K+ + + + + E+L+K N + V + N +A T++ +AKL
Sbjct: 455 VADTRKVEVEEALLKL--NTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKL 512
Query: 301 NKLLRLWESKSNYFETAVIEKMKSPTSSYQDYQNALIS--QHANAISHLTQQTKSTFENY 358
+ L ++ + + + K TS + ++ + S + N ++ + Q TK+
Sbjct: 513 SVLEAEKYQQAKELQITIEDLTKQLTSERERLRSQISSLEEEKNQVNEIYQSTKNELVKL 572
Query: 359 QSQHQAFVGHTMQQIQQLE 377
Q+Q Q + + Q+E
Sbjct: 573 QAQLQVDKSKSDDMVSQIE 591
>At3g52350.1 68416.m05754 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 180
Score = 36.3 bits (80), Expect = 0.082
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 735 SGGIDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI 769
S I S+N G Q+L+K GW G GLG + QGI P+
Sbjct: 74 STAISSSNIGFQLLKKHGWKEGTGLGITEQGILVPL 109
>At5g08535.2 68418.m01015 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 116
Score = 35.9 bits (79), Expect = 0.11
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 738 IDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI 769
I+S+N G Q+L+K GW G GLG + QGI P+
Sbjct: 14 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPL 46
>At5g08535.1 68418.m01014 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 141
Score = 35.9 bits (79), Expect = 0.11
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 738 IDSTNKGHQMLQKMGWSAG-GLGASGQGIAEPI 769
I+S+N G Q+L+K GW G GLG + QGI P+
Sbjct: 39 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPL 71
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 35.9 bits (79), Expect = 0.11
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 744 GHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLND 790
G ++L+KMG+ GGLG + QGI PI + Q + K +G+ ND
Sbjct: 204 GMKLLEKMGYKGGGLGKNQQGIVAPI------EAQLRPKNMGMGYND 244
>At3g60380.1 68416.m06753 expressed protein
Length = 743
Score = 34.7 bits (76), Expect = 0.25
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 400 MGNFHNSNFSDIGYPQ-MGGYDQNFNANSNSQ-QYGSESGDNYPTNNSISGNE-NSYDSQ 456
+G+ + SNF I + + +S+SQ Y S++ + + + S+S NS +
Sbjct: 266 IGDNYPSNFQPISVDETLKSISSRSTGSSSSQTSYASQNQNRFSPSRSVSAESLNSNVEE 325
Query: 457 IFEQIAKQKKENIEDPDLSNLPNVNFSVPPPGFKPLD 493
+ ++ ++Q P L P+++ S P P P D
Sbjct: 326 LVKEKSRQSSSRSSSPSLPPSPSLSPSPPSPELVPND 362
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 34.3 bits (75), Expect = 0.33
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 592 GWEKLGLYEYYKAKNSARKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRR-YRSRSK 650
G L YE ++ + AR+ + G R++S+S S P +K PT GRR Y R++
Sbjct: 92 GGSDLKCYECGESGHFARECRSRG-GSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRAR 150
Query: 651 TPEP 654
+P P
Sbjct: 151 SPPP 154
>At5g40160.1 68418.m04874 ankyrin repeat family protein (EMB506)
identical to ankyrin repeat protein EMB506 [Arabidopsis
thaliana] GI:5911312; contains ankyrin repeats,
Pfam:PF00023
Length = 315
Score = 33.9 bits (74), Expect = 0.44
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 135 IDSITTQINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINL 194
+ +TT N +E + E L + V++QQ + +++S + LQ +A I L
Sbjct: 108 VQKLTTTDNYEEELAKEVEQLLEPEERVILQQNEKPNLKMISTKSWKPLQTLALSMQIQL 167
Query: 195 SELDNILQPIIDSCTKDSISSGKGWILQHATSHDAGKVISQHLLRK 240
+DN+++ +D D + L A VIS HLLRK
Sbjct: 168 --MDNLIENGLDI---DDVDKDNQTALHKAIIGKKEAVIS-HLLRK 207
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 33.5 bits (73), Expect = 0.58
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 744 GHQMLQKMGW-SAGGLGASGQGIAEPI 769
G +M+ KMG+ GGLG G+GIA+PI
Sbjct: 639 GSKMMAKMGFIDGGGLGKDGKGIAQPI 665
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.1 bits (72), Expect = 0.76
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 623 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNI 656
KS S SP P+ + P+P RR RSRS++P P++
Sbjct: 247 KSTSRSPGPRSKSRSPSP--RRSRSRSRSPLPSV 278
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 33.1 bits (72), Expect = 0.76
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 623 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNI 656
KS S SP P+ + P+P RR RSRS++P P++
Sbjct: 247 KSTSRSPGPRSKSRSPSP--RRSRSRSRSPLPSV 278
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 32.3 bits (70), Expect = 1.3
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 141 QINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINLSELD 198
QI L+ ++ + E L+ + + Q++++ S QME LQ ++ +NLSEL+
Sbjct: 382 QIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELE 439
>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 752
Score = 32.3 bits (70), Expect = 1.3
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 735 SGGIDSTNKGHQMLQKMGWSAGGLGASGQGIAEPISGGFVRDRQDQYKGVGVSLND 790
SGGI G ++L+KMG+ GLG + QGI PI + Q + K +G+ ND
Sbjct: 103 SGGI-----GMKLLEKMGYKGRGLGKNQQGIVAPI------EVQLRPKNMGMGYND 147
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 31.9 bits (69), Expect = 1.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 602 YKAKNSARKMKEDAIAQGYRQKSKSPSPIPKDLQKQ---PTPPGR---RYRSRSKTPEPN 655
Y K + ++K+ ++S +P P D PTPP + R R PEP+
Sbjct: 126 YDQKRKSNQVKQRTSGMQKPKRSSTPKPTESDKPASSYGPTPPPEPRPKRRPRPNIPEPD 185
Query: 656 IPM 658
IPM
Sbjct: 186 IPM 188
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 31.5 bits (68), Expect = 2.3
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 625 KSPSPIPKDLQKQPT---PPGRRYRSRSKTPEPN 655
+SP P K + QPT P R + RSKTPEP+
Sbjct: 308 RSPGPRSKTPEPQPTYFEPSSRTPKQRSKTPEPS 341
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 31.5 bits (68), Expect = 2.3
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 319 IEKMKSPTSSYQDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEM 378
+ ++S + Q + L QH Q K F+ Q Q Q QQ QQL+
Sbjct: 808 LSTLQSNVNQPQLSSSLLQHQHLKQQQDQQMQLKQQFQQRQMQQQQLQARQQQQQQQLQA 867
Query: 379 QKHALEMQK 387
++ A ++Q+
Sbjct: 868 RQQAAQLQQ 876
>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 736
Score = 31.5 bits (68), Expect = 2.3
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 268 KNAEDLKK------NLENVVVPMFCNASI--AVTEEQEAKLNKLLRLWESKSNYFETAVI 319
K AED +K NLEN +V N ++ ++ + L K ++ + N
Sbjct: 350 KEAEDQRKTFTLVSNLENTLVTKSDNLQQMESIYKQTSSVLEKRMKEKDEMINTHN---- 405
Query: 320 EKMKSPTSSYQDYQNALISQHANAISHLTQQTK--STFENYQSQHQAFVGHTMQQIQQLE 377
EKM + +DY ++ +H A HL Q K ENY + QA + ++L+
Sbjct: 406 EKMSIMQQTARDYLASIYEEHEKASQHLEAQRKEYEDRENYLDKCQA---KNKTERRKLQ 462
Query: 378 MQKH 381
QKH
Sbjct: 463 WQKH 466
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 30.7 bits (66), Expect = 4.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 128 LPQHPQEIDSITTQINVLKEQITQSENNLNA---QHAVLIQQQQVKINELVSKAQMESLQ 184
L Q ++ + T++ K+ +TQ EN L++ H + ++ EL ++ + Q
Sbjct: 529 LKQAQSKVQELVTELAESKDTLTQKENELSSFVEVHEAHKRDSSSQVKELEARVESAEEQ 588
Query: 185 IMADENNINLSE 196
+ N+N SE
Sbjct: 589 VKELNQNLNSSE 600
>At1g27430.1 68414.m03343 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1531
Score = 30.7 bits (66), Expect = 4.1
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 276 NLENVVVPMFCNASIAVTEEQEAKLNKLLRLWESKSNYFETAVIEKMKSPTSSYQDYQNA 335
++EN + N+ I +A + +E +SN+F +++ S Q +QN
Sbjct: 710 SIENRPINSRRNSQIDPNISLDALSGNRMSQFEHESNFFNHG--DQLPSNQHHQQHFQNR 767
Query: 336 LISQHANA----ISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQ 386
+ H + + HL + Q Q Q + +QQ Q++++Q+H LE +
Sbjct: 768 DMLSHLHIGDQDLEHLITLQLQQQQKIQMQQQQKI--QLQQQQKIQLQQHQLEQE 820
>At5g06265.1 68418.m00701 hyaluronan mediated motility
receptor-related contains weak similarity to hyaluronan
mediated motility receptor (Intracellular hyaluronic
acid binding protein) (Receptor for hyaluronan-mediated
motility) (CD168 antigen) (Swiss-Prot:O75330) [Homo
sapiens]
Length = 106
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 146 KEQITQSENNLNAQHAVLIQQQQV-KINELVSKAQMESLQIMADENNINLSELDNILQPI 204
++ I Q + ++ + +L Q++++ K+NELV + + LQ +EN + L+EL+ L +
Sbjct: 44 QQHIPQGKESVQVKK-ILFQEKKIQKLNELVRDLRRQLLQ-CRNENQVELTELETELDQL 101
Query: 205 I 205
+
Sbjct: 102 L 102
>At1g78815.1 68414.m09187 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 195
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 612 KEDAIAQGYRQKSKSPSPIPKDLQKQPTPPG-RRYRSRSK 650
K IA+G Q P P P Q P PP RY S+ +
Sbjct: 7 KGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKR 46
>At1g62220.1 68414.m07018 expressed protein
Length = 153
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 426 NSNSQQYGSESGDNYPTNNSISGNENSYDSQIFEQIAKQKKENIEDPDLS 475
+S+S Y S +G N P + EN Y S + IAK +K + S
Sbjct: 56 SSSSDVYSSATGFNNPKGPDANAYENGYTSTSGQVIAKGRKARVSSASAS 105
>At5g07970.1 68418.m00926 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1097
Score = 29.9 bits (64), Expect = 7.1
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 146 KEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMA-DENNINLS-ELDNILQP 203
++Q+T ++ L QHA+ Q + +I + + K Q+E+ Q+ + N +N S DN P
Sbjct: 179 RQQMTFNDMQLLKQHAMAKQMHEYQIQQQLQKQQLEARQLNSLHSNAVNGSLSSDNQSHP 238
Query: 204 II 205
I
Sbjct: 239 SI 240
>At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam profile: PF01805
surp module
Length = 679
Score = 29.9 bits (64), Expect = 7.1
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 15 IIDKLAQFVARNGPEFEKMTKNKQKNNPKFSFL--YGGEYFNYYQYKVTTEQAIL 67
II AQF+AR G F + + + NP+F FL F++Y V +L
Sbjct: 490 IIKLTAQFMARYGMNFVQGLRKRVVGNPQFKFLESTNNSRFSFYNGLVIAYSRVL 544
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 618 QGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 654
+ Y +++SP P P+ ++ P+PP R RS S++P P
Sbjct: 144 RSYSPRARSPPP-PR--RRSPSPPPARGRSYSRSPPP 177
Score = 29.5 bits (63), Expect = 9.4
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 588 RDNEGWEKLGLYEYYKAKNSARKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRS 647
R G L YE + + AR+ + G R++SKS S P ++ P+ R Y
Sbjct: 91 RGGRGGSDLKCYECGETGHFARECRNRG-GTG-RRRSKSRSRTPPRYRRSPSYGRRSYSP 148
Query: 648 RSKTPEP 654
R+++P P
Sbjct: 149 RARSPPP 155
>At3g15340.1 68416.m01936 expressed protein
Length = 487
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 121 VNSAPPPLPQHPQEIDSITTQINVLKEQITQSENNL 156
V S L + +E+D+IT +IN L +++ +S+NNL
Sbjct: 218 VKSMAVELNEVKKELDAITWKINHLSDKVGKSQNNL 253
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 29.9 bits (64), Expect = 7.1
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 746 QMLQKMGWSAG-GLGASGQGIAEPI 769
+M+ MG+ G GLG SGQGI PI
Sbjct: 306 KMMASMGYREGMGLGVSGQGILNPI 330
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.5 bits (63), Expect = 9.4
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 622 QKSKSPSPIPKDLQKQPTPPGRRYRS 647
++ +SPSP P ++ P+PP RR+RS
Sbjct: 318 RRRRSPSP-PARRRRSPSPPARRHRS 342
>At1g55080.1 68414.m06291 expressed protein
Length = 244
Score = 29.5 bits (63), Expect = 9.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 346 HLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQK 387
HL QQ ++ + Q Q Q MQQ QQ + Q+H ++ Q+
Sbjct: 53 HLQQQQQT--QQQQQQFQPQQQQEMQQYQQFQQQQHFIQQQQ 92
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 29.5 bits (63), Expect = 9.4
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 589 DNEGWEKLGLYEYYKAKNSARKMKEDAIAQGYRQKSKSPSPIPKD-----LQKQPTPPGR 643
D GW L L N + + Q R S SP P P+ + +PP R
Sbjct: 98 DGSGWVTLPLNREDTQSNISPPRR-----QRTRNDSPSPEPGPRRSVADRVDTDMSPPRR 152
Query: 644 RYRSRSKTPEPN 655
R R S +PEPN
Sbjct: 153 RKRHNSPSPEPN 164
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 29.5 bits (63), Expect = 9.4
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 330 QDYQNALISQHANAISHLTQQTKSTFENYQSQHQAFVGHTMQQIQQLEMQKHALEMQK 387
Q Q I Q HL QQ + Q QHQ QQ Q ++Q H + Q+
Sbjct: 692 QQQQQQQIQQQQQQQQHLQQQQMPQLQQQQQQHQQ---QQQQQHQLSQLQHHQQQQQQ 746
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.129 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,724
Number of Sequences: 28952
Number of extensions: 681805
Number of successful extensions: 2070
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2002
Number of HSP's gapped (non-prelim): 90
length of query: 816
length of database: 12,070,560
effective HSP length: 87
effective length of query: 729
effective length of database: 9,551,736
effective search space: 6963215544
effective search space used: 6963215544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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