Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000243-TA|BGIBMGA000243-PA|IPR013865|Protein of unknown
function DUF1754, eukaryotic
(110 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 49 2e-07
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 1.2
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 1.6
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha... 25 2.1
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 24 6.3
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 24 6.3
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 24 6.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 24 6.3
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 23 8.3
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 23 8.3
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 23 8.3
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 23 8.3
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 48.8 bits (111), Expect = 2e-07
Identities = 21/43 (48%), Positives = 34/43 (79%), Gaps = 4/43 (9%)
Query: 68 EKMQKQRILQKAE----MTHKQRVEKFNQHLDSLTEHFDIPKV 106
E +Q+QR+LQKA+ THK R++++N+ L+S +EHFD+PK+
Sbjct: 73 ESVQEQRLLQKAKNERLKTHKDRIDEYNRLLESQSEHFDMPKI 115
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 1.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 58 KAEIAYQNMQEKMQKQRILQ--KAEMTHKQRVEKFNQHLDS 96
+A+ YQ+++E + K+R Q K E K++ EK N + S
Sbjct: 88 EADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSS 128
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 1.6
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 52 NVDRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFN----QHLDSLTE 99
NVD T E+ +++Q+++ K+ LQK+++ + ++EK + QH+ SL +
Sbjct: 799 NVDYLTLKELP-KDLQKQILKESNLQKSDLISEVKLEKPHIVTFQHVQSLED 849
>SPCC1020.07 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 2.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 55 RRTKAEIAYQNMQEKMQKQRI-LQKAEMTHKQRVEKFNQHLDSLTEHFD 102
R TK N+ K++ I + A + EK + HL L +HFD
Sbjct: 83 RHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLFDHFD 131
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 55 RRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFN 91
R+T A AY+ + + +++ +L H+ R+ + N
Sbjct: 193 RQTLANFAYKEYESEERRRTVLNIRRAEHEARLAELN 229
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 59 AEIAYQNMQEKMQKQRILQKAEMTHKQRVEK 89
A+ +Y MQE+ K++I + KQR ++
Sbjct: 106 ADESYDPMQERQSKKQIQDRESDYQKQRYDR 136
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 23.8 bits (49), Expect = 6.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 57 TKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDI 103
T I N +E+ IL K+ K VE+ N H+DS + DI
Sbjct: 31 TDFHIETANNEEEKDANVILNKSV---KMEVEEVNGHVDSSSTETDI 74
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 55 RRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLD 95
RR IAY ++ K + K E+ ++++EK N D
Sbjct: 360 RRRDDRIAYMHIIRKRYLNEQISKEEIDLQKKIEKRNSTYD 400
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 89 KFNQHLDSLTEHFDIPKVSWTK 110
KF +H D+ F+I WTK
Sbjct: 89 KFERHTDAENVQFEILSDDWTK 110
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 23.4 bits (48), Expect = 8.3
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 57 TKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFD 102
TK+++ Q K + ++ + KQR+EK Q ++ L ++
Sbjct: 391 TKSQVDSAVEQLKSRIAHFKEQQDSVTKQRIEKAKQEIEKLEAKYN 436
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 8.3
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 58 KAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPK 105
+A+ AY+ +Q+ + R L +E +++ EKF D +IPK
Sbjct: 556 RAKDAYRTLQDNIVSGRGLSLSEKSYRILPEKFRPVCDKRV--IEIPK 601
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.4 bits (48), Expect = 8.3
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 67 QEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTE 99
Q + K +++ + + +QR+ + + LDSL +
Sbjct: 215 QNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.126 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,750
Number of Sequences: 5004
Number of extensions: 7826
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 12
length of query: 110
length of database: 2,362,478
effective HSP length: 64
effective length of query: 46
effective length of database: 2,042,222
effective search space: 93942212
effective search space used: 93942212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)
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