GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000243-TA|BGIBMGA000243-PA|IPR013865|Protein of unknown
function DUF1754, eukaryotic
         (110 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0603 - 30295130-30295389,30296840-30296987                       53   4e-08
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   1.9  
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754...    27   2.5  
09_06_0333 + 22385995-22386196,22386605-22386663,22387544-223877...    27   3.3  

>02_05_0603 - 30295130-30295389,30296840-30296987
          Length = 135

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 21/53 (39%), Positives = 35/53 (66%)

Query: 54  DRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKV 106
           D  T AE  Y   ++K+   ++ + A  +H+ R++ FNQ+L +L+EH+DIPKV
Sbjct: 80  DHLTPAERRYMEQKQKIDMHKLAKVANKSHRDRIQDFNQYLANLSEHYDIPKV 132


>01_07_0124 +
          41212728-41212922,41215156-41215210,41215336-41217128,
          41217363-41217521,41217883-41218054,41218173-41218471,
          41219060-41219368
          Length = 993

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 52 NVDRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSL 97
          ++D+R++AE   + +QEK++    +QKA +     V K    L  L
Sbjct: 50 DLDKRSQAETQRRKIQEKLRVALFVQKAALQFIDAVRKTEHPLPEL 95


>05_07_0055 -
           27374028-27374080,27374205-27374295,27374930-27375448,
           27375544-27375779,27376363-27376846,27376993-27378282
          Length = 890

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 59  AEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSL 97
           A   YQ  +++ QK+ +LQ+ +   K++ E+ N+  + L
Sbjct: 249 ARTLYQMYEQEEQKKMVLQEKQEQEKRKQEELNREREEL 287


>09_06_0333 +
          22385995-22386196,22386605-22386663,22387544-22387762,
          22387849-22388097
          Length = 242

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 56 RTKAEIAYQNMQEKMQKQRILQKAEMTHKQR 86
          +  +E+  QN     Q QR+ + AE+ HK+R
Sbjct: 3  KVNSELVLQNCYIMEQNQRLKKAAELLHKER 33


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.126    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,745
Number of Sequences: 37544
Number of extensions: 41226
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)