GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000243-TA|BGIBMGA000243-PA|IPR013865|Protein of unknown
function DUF1754, eukaryotic
         (110 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   7.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 64  QNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKV 106
           +N +E  ++ R   + E+  K        H   LT HF  PKV
Sbjct: 481 RNNKEDSEEFRQRLRKELDSKTGGVNLKGHAHWLTLHFKDPKV 523


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 50  PTNVDRRTKAEIAYQNMQEKMQK--QRILQKAEMTHKQRV 87
           PT++   T+AEI  +++Q +  K   R +Q  + + K+++
Sbjct: 128 PTSIPYATRAEIKTESIQPETTKVDTREVQPHDASEKEQL 167


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 56  RTKAEIAYQNMQEKMQKQRILQKAEMTHK 84
           R K+E  + + +   + +RI  K++  HK
Sbjct: 632 RPKSENNFASQELSREGRRIFHKSDTFHK 660


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 56  RTKAEIAYQNMQEKMQKQRILQKAEMTHK 84
           R K+E  + + +   + +RI  K++  HK
Sbjct: 600 RPKSENNFASQELSREGRRIFHKSDTFHK 628


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.126    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,235
Number of Sequences: 429
Number of extensions: 424
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 140,377
effective HSP length: 50
effective length of query: 60
effective length of database: 118,927
effective search space:  7135620
effective search space used:  7135620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)