GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000243-TA|BGIBMGA000243-PA|IPR013865|Protein of unknown
function DUF1754, eukaryotic
         (110 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16810.1 68414.m02019 expressed protein                             54   2e-08
At3g51090.1 68416.m05594 expressed protein                             28   1.6  
At1g75150.1 68414.m08729 expressed protein ; expression supporte...    26   4.9  
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel...    26   6.5  
At2g16460.2 68415.m01886 expressed protein                             26   6.5  
At2g16460.1 68415.m01885 expressed protein                             26   6.5  
At1g53050.1 68414.m06007 protein kinase family protein contains ...    26   6.5  
At2g40800.1 68415.m05033 expressed protein                             25   8.6  
At1g47900.1 68414.m05334 expressed protein                             25   8.6  

>At1g16810.1 68414.m02019 expressed protein
          Length = 144

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 21/53 (39%), Positives = 37/53 (69%)

Query: 54  DRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKV 106
           D  T AE  Y   ++++  Q++ ++A  +H+ R+E FNQ+L +++EH+DIPKV
Sbjct: 89  DHLTPAERRYIEQKQRLDVQKLAKEANKSHRNRIEDFNQYLANMSEHYDIPKV 141


>At3g51090.1 68416.m05594 expressed protein
          Length = 298

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 76  LQKAEMTHKQRVEKFNQHLD-SLTEHFDI 103
           +QKAEMT +  + KF   ++ SL  HF +
Sbjct: 170 MQKAEMTQESNLSKFKSEINSSLDHHFSL 198


>At1g75150.1 68414.m08729 expressed protein ; expression supported
           by MPSS
          Length = 753

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/43 (20%), Positives = 24/43 (55%)

Query: 64  QNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKV 106
           + M++K+ +QR+ +K E+  K      +++ + +  H   P++
Sbjct: 569 EEMEKKLLQQRLYKKMELKAKSSSSTADENSEEILRHIKKPEI 611


>At3g22104.1 68416.m02789 phototropic-responsive NPH3
           protein-related contains BTB/POZ domain,
           INTERPRO:IPR000210
          Length = 506

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 57  TKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSL 97
           T  E   Q  Q++ QKQ IL+  ++      EK  +H++ +
Sbjct: 425 TLDEQQQQQQQQQQQKQLILRMEKVETSGENEKLKEHIEGI 465


>At2g16460.2 68415.m01886 expressed protein
          Length = 173

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 64  QNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEH 100
           +N+ E    +  +QK EM     + KF   + S  EH
Sbjct: 90  ENVSESFVSKAEMQKIEMIQDSNLSKFKSEVKSSQEH 126


>At2g16460.1 68415.m01885 expressed protein
          Length = 230

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 64  QNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEH 100
           +N+ E    +  +QK EM     + KF   + S  EH
Sbjct: 90  ENVSESFVSKAEMQKIEMIQDSNLSKFKSEVKSSQEH 126


>At1g53050.1 68414.m06007 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 694

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 51  TNVDRRTKAEIAYQNMQEKMQKQRILQKAEMTHKQRVEKFNQHLDSLTEHFDI 103
           T   R   A  A   +   MQK++    ++ T++ R EKFN H + +   F I
Sbjct: 466 TKESRAIPAPDANAELVASMQKRQ----SQSTNRSRSEKFNPHPEEVASGFPI 514


>At2g40800.1 68415.m05033 expressed protein
          Length = 377

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 66  MQEKMQKQRILQKAEMTHKQRVEKFNQ 92
           ++E+   +R LQ+AE  H++ +EK  +
Sbjct: 348 IEEEEDAERELQEAERKHREEIEKLEK 374


>At1g47900.1 68414.m05334 expressed protein
          Length = 1054

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)

Query: 73  QRILQKAEMTHKQRVEKFNQHLDSLTEHFDIPKVS 107
           Q+I ++ +M   +RVE  N H++ + +  ++ K++
Sbjct: 499 QQIKKEKDMAALERVESVNSHVELMDDFLEMEKLA 533


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.126    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,240
Number of Sequences: 28952
Number of extensions: 37115
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 10
length of query: 110
length of database: 12,070,560
effective HSP length: 71
effective length of query: 39
effective length of database: 10,014,968
effective search space: 390583752
effective search space used: 390583752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)