Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000242-TA|BGIBMGA000242-PA|IPR010703|Dedicator of
cytokinesis
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model...    46   1e-04
At3g29190.1 68416.m03661 terpene synthase/cyclase family protein...    33   0.70 
At4g21280.1 68417.m03075 oxygen-evolving enhancer protein 3, chl...    31   2.1  
At5g59510.1 68418.m07458 expressed protein                             31   3.7  
At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein ...    30   4.9  
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein...    30   4.9  
At5g02600.2 68418.m00195 heavy-metal-associated domain-containin...    30   6.5  
At5g02600.1 68418.m00196 heavy-metal-associated domain-containin...    30   6.5  
At5g51340.1 68418.m06366 expressed protein                             29   8.6  
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    29   8.6  
At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM do...    29   8.6  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    29   8.6  

>At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model
            reflects the alignment of a full-length cDNA sequence
            gi:18496702.  There are multiple frame shifts in the gene
            model resulting in a truncated protein.  The alternate
            model includes modifications in exons 14, 17 and 29 to
            compensate for frame shifts and maximize the protein
            length.  It is not based on EST data.  adapter protein
            SPIKE1 [Arabidopsis thaliana] GI:18496703
          Length = 1757

 Score = 45.6 bits (103), Expect = 1e-04
 Identities = 72/309 (23%), Positives = 112/309 (36%), Gaps = 41/309 (13%)

Query: 227  YARLAYCLRMNATFLDSVMEQ-LRPEP----EYFRVGFYGKGCPLFVRNKQFVYRGHEYE 281
            Y +LA C  +     +S+++Q   P P     Y+RVGFYG+      R K++VYR     
Sbjct: 1468 YGQLAKCHTLLTNIYESILDQESNPIPFIDATYYRVGFYGEKFGKLDR-KEYVYREPRDV 1526

Query: 282  RIGAFTQRLQAEYVS---AHILMRNTPPDESVIANDGQYIQICNVKPVPARRSWPSGAPD 338
            R+G   ++L   Y S   ++ ++   P    V A D Q   +C                 
Sbjct: 1527 RLGDIMEKLSHIYESRMDSNHILHIIPDSRQVKAEDLQ-AGVC----------------- 1568

Query: 339  QVKRYYACNDVDTFLCDRPLQKPPIDKDNEFKSLWIERTTLVTESPLPGILRWSEVVSRS 398
                Y     VD  + D  L      +     SL        TE   P ++    V    
Sbjct: 1569 ----YLQITAVDAVMEDEDLGS----RRERIFSLSTGSVRARTEGSFPALVNRLLVTKSE 1620

Query: 399  VEEIPPVEFACETMEATERELRSLISQYTA---DPMRNINPFSMRLQGTIDANVQGGISK 455
              E  PVE A   +E     LR+ + +  +   D +  +      LQG++   V  G+  
Sbjct: 1621 SLEFSPVENAIGMIETRTTALRNELEEPRSSDGDHLPRLQSLQRILQGSVAVQVNSGVLS 1680

Query: 456  YEQAFLTSEFXXXXXXXXXXXXXXXXXLVGSQLAVVDAGLALHGRLAPDEVKPLHRRLVE 515
               AFL+ E                   +   +AV    + +H RL  +E +  H +LV 
Sbjct: 1681 VCTAFLSGE---PATRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQEFHTQLVN 1737

Query: 516  RFNQLRQNL 524
             F  L   L
Sbjct: 1738 GFQSLTAEL 1746


>At3g29190.1 68416.m03661 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 519

 Score = 33.1 bits (72), Expect = 0.70
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 69  DTVLMERVS-TEGWREAGAAFVGCVTRLLERLLDYRAVMQGAEHRDKRMAATVNLLNFYK 127
           D +L E +S T    E+ AA   C   +  R+   R  +  ++H +  M   V  ++FY+
Sbjct: 129 DYILDEALSFTSSHLESLAANGACPPHMSRRI---RNALNASQHWNMEMLVAVEYISFYE 185

Query: 128 NEIDRKEMYLRY 139
            E D  EM L++
Sbjct: 186 KEKDHNEMLLKF 197


>At4g21280.1 68417.m03075 oxygen-evolving enhancer protein 3,
           chloroplast, putative (PSBQ1) (PSBQ) identical to
           SP|Q9XFT3 Oxygen-evolving enhancer protein 3-1,
           chloroplast precursor (OEE3) (16 kDa subunit of oxygen
           evolving system of photosystem II) (OEC 16 kDa subunit)
           {Arabidopsis thaliana}; similar to SP|P12301
           Oxygen-evolving enhancer protein 3, chloroplast
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit) {Spinacia
           oleracea}; contains Pfam profile PF05757: Oxygen
           evolving enhancer protein 3 (PsbQ)
          Length = 223

 Score = 31.5 bits (68), Expect = 2.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 305 PPDESVIANDGQYIQICNVKPVPARRSWPSGAPD-QVKRYYACNDVDTFLCDRPLQKPPI 363
           PP E+          I NVKP+  R++WP    D + K  Y   D++T +  +P  +   
Sbjct: 118 PPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKS 177

Query: 364 DKD 366
            KD
Sbjct: 178 LKD 180


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 551 DKRSQSIQQTENYYEEGHFYDKPLSVEDPLEQTTMSASLPVCDNRDCNDDGSMVKSAPPL 610
           D+    + + ++ +E  HF  KP+       +T+ S+S PV   R  +   +   S+ P+
Sbjct: 3   DENLWKVVKKDSIFETTHFSSKPVFTRSFSTKTSSSSSKPVF-TRSFSTKPTSYSSSEPI 61

Query: 611 PTRPKSGDP---RSP--TRPSTDKYRYSKSDVIRCVMSMNLKMYVGGGVRSWC 658
             R  S  P   +SP  +R  + K     S   +C +S +L    G  V   C
Sbjct: 62  FRRSFSAKPTSSKSPFLSRSGSTKCPVDTSSTSKCSISRSLSQ-KGASVTRKC 113


>At5g40710.1 68418.m04941 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 272

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 496 ALHGRLAPDEVKPLHRRLVERFNQLRQNLGPGLARARRQLSESIVNTPLP 545
           A HG+   D    LH  LV    +L+    P  A   R L ES+ N+  P
Sbjct: 136 ASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFP 185


>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
           5-epi-aristolochene synthase, Nicotiana tabacum,
           PATX:G505588
          Length = 604

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 69  DTVLMERVS-TEGWREAGAAFVGCVTRLLERLLDYRAVMQGAEHRDKRMAATVNLLNFYK 127
           D +L E +S T    E+ AA   C   L  R+   R  +  ++H +  M   V  + FY+
Sbjct: 214 DFILEEALSFTSSHLESLAASGTCPPHLSVRI---RNALGLSQHWNMEMLVPVEFIPFYE 270

Query: 128 NEIDRKEMYLRY 139
            EI+  EM L++
Sbjct: 271 QEIEHDEMLLKF 282


>At5g02600.2 68418.m00195 heavy-metal-associated domain-containing
           protein low similarity to gi:3168840 copper homeostasis
           factor; contains Pfam heavy-metal-associated domain
           PF00403; predicted proteins, Arabidopsis thaliana
          Length = 319

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 562 NYYEEGHFYDKPLSVEDPLEQTTM---SASLPVCDNRDCND-DGSMVKSAPPLPTRPKSG 617
           +++E    Y+  LS ++P  + T    +ASL   +++D +  D       PP P+ P+S 
Sbjct: 178 DFFEGFLDYEPVLSPDNPFSEPTKASPTASLSSLEDKDVSSPDFKFSPPPPPPPSPPQSS 237

Query: 618 DPRSPTRPST 627
            P  P + S+
Sbjct: 238 PPSPPEKNSS 247


>At5g02600.1 68418.m00196 heavy-metal-associated domain-containing
           protein low similarity to gi:3168840 copper homeostasis
           factor; contains Pfam heavy-metal-associated domain
           PF00403; predicted proteins, Arabidopsis thaliana
          Length = 319

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 562 NYYEEGHFYDKPLSVEDPLEQTTM---SASLPVCDNRDCND-DGSMVKSAPPLPTRPKSG 617
           +++E    Y+  LS ++P  + T    +ASL   +++D +  D       PP P+ P+S 
Sbjct: 178 DFFEGFLDYEPVLSPDNPFSEPTKASPTASLSSLEDKDVSSPDFKFSPPPPPPPSPPQSS 237

Query: 618 DPRSPTRPST 627
            P  P + S+
Sbjct: 238 PPSPPEKNSS 247


>At5g51340.1 68418.m06366 expressed protein 
          Length = 726

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 207 EKGLPLLRELATLYEIKLCDYARLAYCLRMNATF 240
           E+ L LL+ + + Y++K  +Y+ L++C  + A+F
Sbjct: 71  ERSLLLLKSIPSSYDLKFQNYSLLSHCYHLLASF 104


>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 586 SASLPVCDNRDCNDDGSMVK---SAPPLPTRPKSGDPRSPTRPSTD 628
           S SLPV D+   + D  + +   S PP P    SGD RSP+ P+ D
Sbjct: 51  SDSLPVFDDLGRDGDDLLFRDVFSGPP-PKYGSSGDSRSPSAPAFD 95


>At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM
           domain-containing protein similar to polyamine oxidase
           isoform-1 [Homo sapiens] GI:14860862; contains Pfam
           profile:PF01593  Flavin containing amine oxidase
          Length = 746

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 94  RLLERLLDYRAVMQGAEHRDKRMAATVNLLNFYKNEIDRKEMYLRYVYKLHDLHIASDNF 153
           +LL+++ + R +M+GA  +         L   Y    D +E       KL D H+A+  +
Sbjct: 269 KLLDKVTEVREMMEGAAKKISLGEVLETLRVLYGVAKDSEER------KLFDWHLANLEY 322

Query: 154 VEAGCTLLLYAETLSWDSD 172
             AGC   L A    WD D
Sbjct: 323 ANAGCLSNLSA--AYWDQD 339


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 691 ADEHRMHKDLDLTVESLRYEEIISMMSEPLRVGD 724
           AD H  ++D+ L V+++ YEE++S+     R+GD
Sbjct: 530 ADIHDRYRDMRLDVDNMTYEELLSLEE---RIGD 560


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,392,687
Number of Sequences: 28952
Number of extensions: 741553
Number of successful extensions: 1991
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1980
Number of HSP's gapped (non-prelim): 18
length of query: 754
length of database: 12,070,560
effective HSP length: 87
effective length of query: 667
effective length of database: 9,551,736
effective search space: 6371007912
effective search space used: 6371007912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)