GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000242-TA|BGIBMGA000242-PA|IPR010703|Dedicator of
cytokinesis
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    34   0.084
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    28   4.2  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    28   5.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   5.5  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    27   9.6  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 33.9 bits (74), Expect = 0.084
 Identities = 20/89 (22%), Positives = 34/89 (38%)

Query: 531 ARRQLSESIVNTPLPPVPALDKRSQSIQQTENYYEEGHFYDKPLSVEDPLEQTTMSASLP 590
           +R +  E+  + P PP P +   S ++ Q     + G+    P S     +   +S S  
Sbjct: 57  SRHRYPETPPSLPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTA 116

Query: 591 VCDNRDCNDDGSMVKSAPPLPTRPKSGDP 619
              +   +   S    +P  PT P S  P
Sbjct: 117 ASQHHHHHSSSSSYAVSPTSPTSPTSSGP 145


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 588 SLPVCDNRDCNDDGSMVKSAPPLPTR-PKSGDPRSPTR 624
           +LPVCD+   NDD       PP PT   K     SP R
Sbjct: 567 TLPVCDSEKENDDLECYFRTPPKPTTLQKQQQSPSPWR 604


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/81 (24%), Positives = 35/81 (43%)

Query: 506 VKPLHRRLVERFNQLRQNLGPGLARARRQLSESIVNTPLPPVPALDKRSQSIQQTENYYE 565
           V P+   L+ R    +Q+L      A  +   + +N   PP   + ++S +IQQ+ N   
Sbjct: 163 VTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEFPPHYRIARKSVAIQQSGNMAN 222

Query: 566 EGHFYDKPLSVEDPLEQTTMS 586
                 KP  +  P++  T S
Sbjct: 223 GSADAVKPAVLYPPIQDLTSS 243


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 540 VNTPLPPVPALDKRSQSIQQTENYYEEGHFYDKPLSVEDPLEQTTMSASLPVCDNRDCND 599
           V + +PP P+    S S  QT   Y+    Y    +   PL   + +A LPV   R  + 
Sbjct: 147 VMSQMPPPPSYSS-SGSYSQT---YQSNANY----TASSPLPTASANAPLPVPPPRRVSQ 198

Query: 600 DGSMVKSAPPLPTRPKSGDP-RSPTRPSTDKYR 631
           + S    + P  T   +  P + P  P+  K R
Sbjct: 199 NSSYASGSVPAATAASTASPVKKPPPPAPPKPR 231


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 504 DEVKPLHRRLVERFNQLRQNLG--PGLARARRQLSESIVNTPLPPVPALDKRSQSIQQTE 561
           +E KP   R  E+     Q  G  P         SES  N+P PPV   + +   ++Q +
Sbjct: 396 EEEKPAESR--EQLESAEQTNGVKPETQAQNMSASESQANSPAPPVEEGNTQPSPVEQLQ 453

Query: 562 N 562
           N
Sbjct: 454 N 454


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,310,595
Number of Sequences: 5004
Number of extensions: 139462
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 7
length of query: 754
length of database: 2,362,478
effective HSP length: 78
effective length of query: 676
effective length of database: 1,972,166
effective search space: 1333184216
effective search space used: 1333184216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)