Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000241-TA|BGIBMGA000241-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (986 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    32   0.34 
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    29   4.2  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   5.5  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    27   9.7  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 618 LLSSVQHCAEWAAGAEGQEPIRKCLRSLGAVFRLAVQSRRLFARATGGQYEDSFRRDVRA 677
           L +S+ H  +W +    + P +  +R L       V+   L A +   Q E   R   ++
Sbjct: 258 LYTSLYHIFKWCSDFISKPPTKSLIRLLAEHTLNPVEKSVLLALSDFRQDESYCRICTQS 317

Query: 678 AL---HALKAFAQ-HPHREHLAPAQIALMTSWASVAREVSAALGAAETA 722
            +     L+AF   HP  +HL  A   LM  W S++ + S A    E A
Sbjct: 318 CVTLPDILEAFPSCHPPVDHLISALPQLMPRWYSISNDPSLANKRLEMA 366


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 241 LRQTGQHPAEKEYTFKVYQCEEKEFHQLHDMLIRKQTNKCNILPGQ-PNYGIVVALRLLA 299
           L Q   H A+    F   QC ++ +HQ    LI   T  C ++ G+ P  G++   +L A
Sbjct: 235 LYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTT--CLLILGKSPTKGLLEKYKLTA 292

Query: 300 NSGSVTEAVASGATITAKRGFPD-VIMPGDVRNDLYLTL 337
               + +A+ SG   + +    D       ++  +YLTL
Sbjct: 293 AFEPLIKALKSGDIKSFRLSLEDNSRRKWFIKRGIYLTL 331


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 580 LVLISICSLLDESRFQHFKPVLDVYIEEHFSAALVYKGLLSSVQHCAEWAAGAEGQEPI 638
           LV  +  +L D+  + +F     V  ++  S+   Y G+L  V HC   AAGA    PI
Sbjct: 198 LVYTTCLALEDDDAYTNF-----VSAQQEDSSCKFYGGILIGVSHCKYAAAGASYPLPI 251


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 838 NSPV-LGSMVAALLGVMELLRPIHYQRLWSHLAPH----PHDRKPL 878
           N P+ L   +A  LG+ +L RP   ++LW ++  H    P+D++ +
Sbjct: 118 NKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTI 163


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,037,836
Number of Sequences: 5004
Number of extensions: 154426
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 5
length of query: 986
length of database: 2,362,478
effective HSP length: 80
effective length of query: 906
effective length of database: 1,962,158
effective search space: 1777715148
effective search space used: 1777715148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)