Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000241-TA|BGIBMGA000241-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (986 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    35   0.31 
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    32   1.6  
At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containi...    31   2.9  
At5g01700.1 68418.m00087 protein phosphatase 2C, putative / PP2C...    30   6.6  
At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein / c...    30   8.7  

>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
           (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 23/134 (17%)

Query: 467 ASYLS--LPSCANDAARAAPPNGVVPSFQRSSKENCTISTLLCSTKLTQNEDLLALLQWR 524
           ASYL+  L S  ND      P G+   F +S+KEN     LLC+      EDL A  + R
Sbjct: 796 ASYLTSLLSSTTNDLL---VPVGLQKRFDQSTKENILSVILLCA------EDLPAYGKLR 846

Query: 525 AHPEKVQETLLRVLR-LGDGLSCEELIKFLRDVLDALFALFSTEDGNSTPHSGTV--FLV 581
                    +L +L+ LG  L  +E++K L  +LD     +   D  S P S T    L 
Sbjct: 847 ---------VLSLLKDLGIMLMRDEIVKLLSQLLDKRSQYYYKLDKTSQPLSDTEVDLLC 897

Query: 582 LISICSLLDESRFQ 595
           L+  CS++  S F+
Sbjct: 898 LLLECSMMRTSSFK 911


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 677 AALHALKAFAQHPHREHLAPAQIALMTSWASVARE---VSAALGAAETARVSAAVLDAPV 733
           AA HAL+ F + PHR+H+A A +    + A+++ +   V +++G++   R    V  A V
Sbjct: 53  AASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALV 112


>At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 562

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 236 SLADFLRQTGQHPAEKEYT-FKVYQCEEKEFHQLHDMLIRKQTNKCNILPGQPNYGIVVA 294
           ++ D ++ T   P    YT F    C+E +F ++++ML   + N CN  P    Y IV  
Sbjct: 294 AMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCN--PNVVTYTIV-- 349

Query: 295 LRLLANSGSVTEAV 308
           +  L  S  V EA+
Sbjct: 350 MHSLGKSKQVAEAL 363


>At5g01700.1 68418.m00087 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase type 2C - Saccharomyces
           cerevisiae, EMBL:U72346
          Length = 333

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 545 SCEELIKFLRDVLDALFALFSTEDGNSTPH----SGTVFLVLISICSLLDESRFQHFKPV 600
           S EEL +   D+L   F    +E G  +P+    SGT  + +      L  +   H + V
Sbjct: 77  SQEELFREFEDILVTFFKQIDSELGLDSPYDSFCSGTTAVTVFKQADCLVIANLGHSRAV 136

Query: 601 LDVYIEEHFSAALVYKGLLSSVQHCAEWAAGAEGQ 635
           L    +  F A  +   L   VQ  AE     +G+
Sbjct: 137 LGTRSKNSFKAVQLTVDLKPCVQREAERIVSCKGR 171


>At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein /
           cellulase family protein contains Pfam profile: PF00150
           cellulase (glycosyl hydrolase family 5)
          Length = 508

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 6   EAICGNEQRMCTGSSRHASCLRVGNTNWLRVSDCESVRAAELASCMP 52
           E I  +   +   S+ ++ CL V  TN L  S+C+ V+  E +SC P
Sbjct: 451 ETISASNMLLAAKSTNNSLCLDVDETNNLMASNCKCVK-GEDSSCDP 496


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,461,873
Number of Sequences: 28952
Number of extensions: 840905
Number of successful extensions: 1610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 5
length of query: 986
length of database: 12,070,560
effective HSP length: 88
effective length of query: 898
effective length of database: 9,522,784
effective search space: 8551460032
effective search space used: 8551460032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 64 (29.9 bits)