GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000241-TA|BGIBMGA000241-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (986 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   4.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   4.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   4.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   4.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   4.4  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 581 VLISICSLLDESRFQHFKPVLDV 603
           ++ S   L D+SR +H +P LDV
Sbjct: 52  LIYSFVGLGDDSRIKHLEPNLDV 74


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 508 STKLTQNEDLLALL-----QWRAHPEKVQETLLRVLRLGDGLSCEELI-KFLRDVLDALF 561
           S K  +N D +  +      W  + E++ E L  +LRL +  S   +  K+LR V+D  +
Sbjct: 550 SAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR-VVDPDY 608

Query: 562 ALFST 566
             F T
Sbjct: 609 YEFET 613


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 508 STKLTQNEDLLALL-----QWRAHPEKVQETLLRVLRLGDGLSCEELI-KFLRDVLDALF 561
           S K  +N D +  +      W  + E++ E L  +LRL +  S   +  K+LR V+D  +
Sbjct: 550 SAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR-VVDPDY 608

Query: 562 ALFST 566
             F T
Sbjct: 609 YEFET 613


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 508 STKLTQNEDLLALL-----QWRAHPEKVQETLLRVLRLGDGLSCEELI-KFLRDVLDALF 561
           S K  +N D +  +      W  + E++ E L  +LRL +  S   +  K+LR V+D  +
Sbjct: 550 SAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR-VVDPDY 608

Query: 562 ALFST 566
             F T
Sbjct: 609 YEFET 613


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 508 STKLTQNEDLLALL-----QWRAHPEKVQETLLRVLRLGDGLSCEELI-KFLRDVLDALF 561
           S K  +N D +  +      W  + E++ E L  +LRL +  S   +  K+LR V+D  +
Sbjct: 550 SAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYLR-VVDPDY 608

Query: 562 ALFST 566
             F T
Sbjct: 609 YEFET 613


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,555
Number of Sequences: 317
Number of extensions: 8384
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 986
length of database: 114,650
effective HSP length: 63
effective length of query: 923
effective length of database: 94,679
effective search space: 87388717
effective search space used: 87388717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)