GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000241-TA|BGIBMGA000241-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (986 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0208 + 28412736-28415348                                         31   3.4  
05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217     30   7.9  

>05_07_0208 + 28412736-28415348
          Length = 870

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 230 LGAGVLSLADFLRQTGQHPAEKEYTFKVYQCEEKEFHQLHDMLIRKQTNKCNILPGQPNY 289
           LG   LSL + + + G+HP E  +   +  C           L    T K +I+P   +Y
Sbjct: 580 LGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHY 639

Query: 290 GIVVALRLLANSGSVTEA 307
             +V   LL+  G +TEA
Sbjct: 640 ACMV--DLLSRVGKLTEA 655


>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
          Length = 443

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 235 LSLADFLRQTGQHPAEKEYTFKVYQCEEKEFHQLHDMLIRKQTNKCNILPGQPNYGIVVA 294
           L+L D +   G  P +  +   +Y C      Q    L     N+  I PG  +Y     
Sbjct: 197 LALYDRMVLAGAKPNKVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPGLQHY--TCY 254

Query: 295 LRLLANSGSVTEA 307
           L LL+ SG + EA
Sbjct: 255 LDLLSRSGHLLEA 267


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,665,848
Number of Sequences: 37544
Number of extensions: 1109789
Number of successful extensions: 2510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2510
Number of HSP's gapped (non-prelim): 2
length of query: 986
length of database: 14,793,348
effective HSP length: 89
effective length of query: 897
effective length of database: 11,451,932
effective search space: 10272383004
effective search space used: 10272383004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)