GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000241-TA|BGIBMGA000241-PA|IPR008973|C2
calcium/lipid-binding region, CaLB
         (986 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)             256   6e-68
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)                      199   1e-50
SB_49415| Best HMM Match : PAH (HMM E-Value=0.75)                      56   1e-07
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-04
SB_32315| Best HMM Match : AsnC_trans_reg (HMM E-Value=6.3)            37   0.092
SB_50624| Best HMM Match : F5_F8_type_C (HMM E-Value=6e-10)            31   3.4  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   8.0  

>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score =  256 bits (627), Expect = 6e-68
 Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 33/413 (7%)

Query: 314 ITAKRGFPDVIMPGDVRNDLYLTLEKAEFERGGKSTAKNVLATVTVHDNTGQVISDCV-W 372
           I  K+GFP+VIMPGDVRNDLY+T+   EFERG K+  KN+  T+ V  + G ++ + + +
Sbjct: 356 IARKQGFPEVIMPGDVRNDLYVTVLSGEFERGHKTANKNIEVTMHVLSDNGDILENVISY 415

Query: 373 GASGNGSTSYESLVLYHNNSPAWGEQLRLTVPLETFTHAHVRIEFRHCSTRDKNER--KL 430
           GA  +  + Y S++ YH+  P W E ++L VP+E F  +H+R  F+H S+ ++ ++  K+
Sbjct: 416 GAGEDLVSEYRSVIYYHSGKPEWHETIKLAVPIEQFYESHLRFTFKHRSSGEEKDKSQKV 475

Query: 431 FGFAFARLMEASGATLRDGAHELHVYKCDDPSKLLTASYLSLPSCANDAARAAPPNGVVP 490
           F FAF RLM+  G TL+DG HEL V+KC+  +K+L ++YL   S   +     PP     
Sbjct: 476 FAFAFVRLMQRDGTTLKDGTHELMVFKCNS-TKVLPSTYLQSASFKIEQTLMNPPTKGGA 534

Query: 491 SFQRSSKENCTISTLLCSTKLTQNEDLLALLQWRAHPEKVQETLLRVLRLGDGLSCEELI 550
                  +   I TLLCSTKLTQN DLL LL+WR  P K+++ L+ +++    +S EE++
Sbjct: 535 DAAAYCNDKFNIKTLLCSTKLTQNLDLLGLLKWRQMPGKLKDVLVTLMK----VSGEEIV 590

Query: 551 K------------------FLRDVLDALFALFSTEDGNSTPHSGTVFLVLISICSLLDES 592
           K                  FL D  DALFA+ +    N+  +   VF  L+   SLL + 
Sbjct: 591 KVLTNDNNDDDGDDGNDSDFLTDTFDALFAILNE---NARKYDKLVFDALVFTISLLADK 647

Query: 593 RFQHFKPVLDVYIEEHFSAALVYKGLLSSVQHCAEWA----AGAEGQEPIRKCLRSLGAV 648
           ++ HF+PVL+ YI+ HF+A +V+  L++  +    +A          + + K ++++  +
Sbjct: 648 KYHHFRPVLEAYIDNHFAATIVHSTLIAVYKEYIAYAERDSLERARMDLLLKAMKAMEYI 707

Query: 649 FRLAVQSRRLFARATGGQYEDSFRRDVRAALHALKAFAQHPHREHLAPAQIAL 701
           F+  VQSR L+ R  G +    F+ D+R   H+L     +   E L     AL
Sbjct: 708 FKFIVQSRILYERFNGSKGHAEFQEDLRGMFHSLVNLMTNTKNETLLTQGAAL 760


>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
          Length = 987

 Score =  199 bits (485), Expect = 1e-50
 Identities = 140/418 (33%), Positives = 208/418 (49%), Gaps = 50/418 (11%)

Query: 66  LGLELVPRRGAEAVEPEDISLVELYRVHVESAERAAAVRLRFYNFIIDIXXXXXXXXXXX 125
           +GL+LVPR   E V+ +  S+V LY+VH++S E +  V  R                   
Sbjct: 1   MGLDLVPRINGEMVDADSCSVVHLYQVHLDSEEASNTVTSR------------GTIKRAP 48

Query: 126 XXXXXXXXQSHHLMCSMRDFGHTAGGDEAELLLWLHDARRSQPLSERFRIRIARDGFSNY 185
                     HH+  +M  F      +  E+   L++ + S+  SERF + I +  FSN 
Sbjct: 49  KAKTKNVTTQHHIYFNMNSFMCNVE-ESCEVFFSLYNGKSSKFFSERFMVSIGKH-FSNQ 106

Query: 186 ----------------DLSTTDL-TRELWLVAWVIRVXXXXXXXXXXXXXXXXXXPVARR 228
                           DL + +L + + +LVA +IRV                     RR
Sbjct: 107 KVNQLQKVSNSTCVFTDLGSAELRSTDTYLVAHLIRVGKMLPESKKVSSVSY------RR 160

Query: 229 PLGAGVLSLADFLRQTGQHPAEKEYTFKVYQ-CEEKEFHQLHDMLIRKQTNKCNILPGQP 287
           P G  VL + D L+  G+   E    F   Q   E EF  +H+ +I+K  +K N LP + 
Sbjct: 161 PYGCAVLDIVDLLQ--GKEEIENSELFMPIQFTSETEFLTIHESIIKKLQSK-NGLP-ES 216

Query: 288 NYGIVVALRLLANSGSVTEA-----VASGATITAKRGFPDVIMPGDVRNDLYLTLEKAEF 342
           + GI V++RLL       +         G  +  K GFP++IMPGDVRND+Y+T+EK EF
Sbjct: 217 STGIYVSMRLLHGELEKIQQENPLLFPEGIAVARKLGFPEIIMPGDVRNDVYVTIEKGEF 276

Query: 343 ERGGKSTAKNVLATVTVHDNTGQVISDCVW-GASGNGSTSYESLVLYHNNSPAWGEQLRL 401
           E+ GK+TAKNV  +++V    G++I DC++ GA G   T YES + YHN+SP W E +++
Sbjct: 277 EKSGKTTAKNVEVSMSVIGANGRLIEDCIYLGAGGKPCTEYESFIYYHNSSPKWNETVKV 336

Query: 402 TVPLETFTHAHVRIEFRHCSTRDK--NERKLFGFAFARLMEASGATLRDGAHELHVYK 457
            +P + F  + +R  FRH S  ++   E K F F+F +LM     TL DG+HEL +YK
Sbjct: 337 RIPSDKFEGSLLRFGFRHVSKFEEKHKELKTFAFSFVKLMGEDETTLPDGSHELCMYK 394



 Score =  101 bits (241), Expect = 4e-21
 Identities = 52/153 (33%), Positives = 93/153 (60%), Gaps = 10/153 (6%)

Query: 464 LLTASYLSLPSCANDAARAAPPNGVVPSFQRSSKENCTISTLLCSTKLTQNEDLLALLQW 523
           L   +++++PS  ++          +    RSSK++ ++ TL+CSTKLTQN DL+ +L+W
Sbjct: 489 LAVITFINMPSLVSEVGNMKYSQ--MERLSRSSKDSFSVRTLVCSTKLTQNVDLVGVLKW 546

Query: 524 RAHPEKVQETLLRVLRLGDGLSCEELIKFLRDVLDALFALFSTEDGNSTPHSGTVFLVLI 583
           R     +Q  +  + ++ DG   EE++KFL+D+ DALF++ +    +   +   VF  ++
Sbjct: 547 RKQ-SNLQAVVNSLFKI-DG---EEIVKFLQDIFDALFSILNE---SVEEYGNLVFQAMV 598

Query: 584 SICSLLDESRFQHFKPVLDVYIEEHFSAALVYK 616
            +  +L + ++QHF+ VL+ YIE+HFSA + YK
Sbjct: 599 HVIWILSKQKYQHFQAVLNTYIEKHFSATIAYK 631



 Score = 33.9 bits (74), Expect = 0.65
 Identities = 12/38 (31%), Positives = 25/38 (65%)

Query: 760 EARNIILTTACHHLRVHLARRDELFQCAEMLGELVTLL 797
           ++R +++     H+  +L+R+ E+  CA +LGE++T L
Sbjct: 927 DSREVLVPVIVQHIHYYLSRKTEMKTCAHVLGEVMTSL 964


>SB_49415| Best HMM Match : PAH (HMM E-Value=0.75)
          Length = 117

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 552 FLRDVLDALFALFSTEDGNSTPHSGTVFLVLISICSLLDESRFQHFKPVLDVYIEEHFSA 611
           FL+D+ DALF++ +    +   +   VF  ++ +  +L + ++QHF+ VL+ YIE+HFSA
Sbjct: 1   FLQDIFDALFSILNE---SVEEYGNLVFQAMVHVIWILSKQKYQHFQAVLNTYIEKHFSA 57

Query: 612 ALVYK 616
            + YK
Sbjct: 58  TIAYK 62


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 329 VRNDLYLTLEKAEFERGGKSTAKNVLATVTVHDNTG-QVISDCVWGASGNGSTSYESL-- 385
           ++N LY+  +   F   G S A+N+   V +      Q   +C++G S   S S E+   
Sbjct: 534 LKNLLYIYPQSVNFSSRGTS-ARNIACKVQIMSGEDEQNCIECIFGKSSCASMSKEAYTH 592

Query: 386 VLYHNNSPAWGEQLRLTVPLETFTHAHVRIEFRH--CSTRDKNERK 429
           V YHN +P + E++++  P       H+   F H  CS   K + K
Sbjct: 593 VTYHNRTPDFNEEIKVKCPAHLTDQHHILFTFYHISCSPGKKPDEK 638


>SB_32315| Best HMM Match : AsnC_trans_reg (HMM E-Value=6.3)
          Length = 109

 Score = 36.7 bits (81), Expect = 0.092
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 821 LNTLDVLVETVLHLIGGNSPVLGSMVAALLGVMELLRPIHYQRLWSHLAPHPHDRKPLKD 880
           ++ L V+V+ V+ +   + PV+GS VA L+ +++L+   HY+      +     R  L D
Sbjct: 12  VSLLRVVVKAVIKM-DRSQPVVGSYVACLIAMLQLMDEDHYRMYIDQFS----SRLDLLD 66

Query: 881 FLMRAFLVFR 890
           FLM  F +FR
Sbjct: 67  FLMELFPLFR 76


>SB_50624| Best HMM Match : F5_F8_type_C (HMM E-Value=6e-10)
          Length = 353

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 377 NGSTSYESLVLYHNNSPAWGEQLRLTVPLETFTHAHVRIEFRHCSTRDK 425
           NG+T+ +S+      SP + + +RL  P++  TH  +R+E R C    K
Sbjct: 171 NGNTASDSVADIILTSPIYAKYIRLR-PVQWHTHVCMRVELRGCPVGGK 218


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 324  IMPGDVRNDLYLTLEKA--EFERGGKSTAKNVLATVT--VHDNTGQVISDCV 371
            ++PG  R ++   L+KA  EFE GG+S AK +L  V      NT + I D V
Sbjct: 4126 LVPG--RPNVLEALDKARNEFETGGRSNAKKILVIVVDKRSPNTNEQIKDAV 4175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,386,399
Number of Sequences: 59808
Number of extensions: 1177604
Number of successful extensions: 2171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2152
Number of HSP's gapped (non-prelim): 12
length of query: 986
length of database: 16,821,457
effective HSP length: 89
effective length of query: 897
effective length of database: 11,498,545
effective search space: 10314194865
effective search space used: 10314194865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)