Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000240-TA|BGIBMGA000240-PA|IPR011511|Variant SH3,
IPR001452|Src homology-3
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    36   0.001
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.008
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   0.51 
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    26   1.2  
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    25   2.7  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    24   6.3  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    23   8.3  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 886

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1  MWIPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILE-ENGAWFRGFSTKNRSTWGIFPA 59
          M IP + P +  A+Y W G+    L    G+ ++ L   +G W+ G    N +T GIFP+
Sbjct: 1  MSIPKQLPCMVRALYAWPGEREGDLKFTEGDLIECLSIGDGKWWIGRHI-NTNTQGIFPS 59


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 4   PSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILE-ENGAWFRGFSTKNRSTWGIFPACVV 62
           P+KTP  A+ +Y++  +  + + L   E +QILE  +  W+ G ++K +   G+FP+  V
Sbjct: 725 PTKTP--AIVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGENSKGQQ--GLFPSNYV 780

Query: 63  SL 64
            +
Sbjct: 781 EI 782


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 0.51
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 20  DVRSGLPLEIGETVQILEENGAWFRGFS--TKNRSTWGI 56
           DV SG+P+  G  ++   E   +FR +S    NR+T G+
Sbjct: 591 DVGSGVPMTAGSVLETESEEDLYFRDYSLFEINRNTPGV 629


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 13  AVYNWKGDVRSGLPLEIGETVQILEENGA-WFRGFSTKNRS 52
           A+Y++ G     L L  G+ +Q+ E+ G  W+ G    +++
Sbjct: 286 AIYSFTGRNEKELDLHTGDVIQVSEQLGPDWYMGEKVNSKA 326


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 18/60 (30%), Positives = 24/60 (40%)

Query: 32  TVQILEENGAWFRGFSTKNRSTWGIFPACVVSLRPCTVKGSGATAVAELKDDPLVREIAC 91
           T Q+  + GA     S   +   G   A   + R    KG G   VA+L D P + E  C
Sbjct: 260 TNQVQADPGAAMMFASNDRKPVGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEAEC 319


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 56  IFPACVVSLRPCTVKGSGATAVAE 79
           I PA V+ + PC + G  A+A+ E
Sbjct: 167 IIPALVLPIFPCMICGVIASAIVE 190


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 342

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 35 ILEENGAWFRGFSTKNRST 53
          +  E GAW+ G+ T+  +T
Sbjct: 60 VFVETGAWYDGWETRRHNT 78


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,681
Number of Sequences: 5004
Number of extensions: 19176
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 7
length of query: 110
length of database: 2,362,478
effective HSP length: 64
effective length of query: 46
effective length of database: 2,042,222
effective search space: 93942212
effective search space used: 93942212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)