Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000240-TA|BGIBMGA000240-PA|IPR011511|Variant SH3,
IPR001452|Src homology-3
(110 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289... 29 1.1
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 28 1.9
06_01_0210 - 1596578-1596868,1598550-1598828,1600503-1600511,160... 27 2.5
05_04_0189 - 18911654-18913207,18913310-18913528,18914034-189143... 27 2.5
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 27 3.3
02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784 26 5.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 7.6
05_03_0441 - 14037497-14038006,14038208-14038369 26 7.6
04_04_1171 - 31455136-31455482,31455805-31458982 26 7.6
>04_04_1206 +
31727931-31728048,31728492-31728538,31728782-31728906,
31729067-31729133,31729221-31729283,31729429-31729498,
31729751-31729770,31729840-31729956,31730046-31730227,
31730586-31730640,31731604-31731697,31731791-31731900,
31733167-31733193,31733510-31733701
Length = 428
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 68 TVKGSGATAVAELKDDPLVREIACVLREWARLWKKLYVFRNL 109
T+ SG T+V E+ +V E + +R +RLW+ L FRNL
Sbjct: 240 TMALSGCTSVKEITRGHVVTE-SDRIRRCSRLWRWLCFFRNL 280
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 35 ILEENGAWFRGFSTKNRSTWGIFPACVVSLRPCTVKGSGATAVAEL 80
IL WF F KN S +F +PCTV+ + + EL
Sbjct: 305 ILRRGPEWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKEL 350
>06_01_0210 -
1596578-1596868,1598550-1598828,1600503-1600511,
1600713-1600781
Length = 215
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 16 NWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTW 54
NWK + GL E G V ++E+ F K R+ W
Sbjct: 22 NWKDQPKEGLKGEGGVKVDVVEKLRGLFAKGEAKRRAQW 60
>05_04_0189 - 18911654-18913207,18913310-18913528,18914034-18914367,
18914425-18914592,18914633-18914724,18914814-18914848,
18915377-18915441,18915565-18915669,18916373-18916434,
18916732-18916860,18918050-18918184,18918336-18918457,
18918808-18918965,18919215-18919372,18919447-18919780,
18919853-18919978,18920213-18920443,18920520-18920692
Length = 1399
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 20 DVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVVSLRPCTVKGSGATAVAE 79
DV P E+GE + +L G+S + +T G + VK SG ++ +
Sbjct: 937 DVEKAQPFEVGEKIHVLPSISQPRLGWSNETAATIGAISRIDMD-GTLNVKVSGRNSLWK 995
Query: 80 LKDDPLVREIACVLREWARL 99
+ R A + +W RL
Sbjct: 996 VAPGDAERLSAFEVGDWVRL 1015
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 10 LAVAVYNWKGDVRSGLPLEIGETVQI--LEENGAWFRGFSTKNRSTWGIFPACVVSLR 65
LA AV+N+ G L L +G+ V + + NG W G K + W FPA V R
Sbjct: 283 LAEAVHNFNGTTEKELSLIVGDYVVVRQIAPNG-WAEG-ECKGVAGW--FPAAYVERR 336
>02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784
Length = 1095
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 42 WFRGFSTKNRSTWGIFPACVVSLRPCTVKGSGATAVAELKDDPLVREIACVL 93
W G+ST+ + +V+ P + GSG + EL + + + +L
Sbjct: 420 WLPGWSTETCVAFRALHVVLVAAAPHSTDGSGCSGAGELLNSTIFHHLQAML 471
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 19 GDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTW 54
GD++ GLP+E VQ L W S+ N + W
Sbjct: 367 GDMKGGLPIEAFSAVQELFNGVDWME--SSDNAAFW 400
>05_03_0441 - 14037497-14038006,14038208-14038369
Length = 223
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 17 WKGDVRSGLPLEIGETVQIL-EENGA 41
WKG + PL+ GET+ +L EE GA
Sbjct: 189 WKGPAAAS-PLDNGETIYVLDEERGA 213
>04_04_1171 - 31455136-31455482,31455805-31458982
Length = 1174
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 55 GIFPACVVSLRPCTVKGSGATAVA 78
G+FPA V LR T+ G+G+ A
Sbjct: 535 GVFPAEVFELRQLTILGAGSNRFA 558
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,672,810
Number of Sequences: 37544
Number of extensions: 142021
Number of successful extensions: 249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 9
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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