Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000240-TA|BGIBMGA000240-PA|IPR011511|Variant SH3,
IPR001452|Src homology-3
         (110 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.002
SB_51657| Best HMM Match : SH3_1 (HMM E-Value=2.69999e-40)             38   0.002
SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)                 35   0.013
SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.013
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.069
SB_8979| Best HMM Match : SH3_1 (HMM E-Value=3.6e-05)                  31   0.21 
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)             29   0.85 
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)                       27   2.6  
SB_34057| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.6  
SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)                  27   3.4  
SB_34778| Best HMM Match : Ank (HMM E-Value=0)                         26   7.9  
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)                  26   7.9  

>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 81  KDDPLVREIACVLREWARLWKKLYVFRNL 109
           K+D +V+E+  VLREW+ +WK+ YV   L
Sbjct: 10  KEDAIVKEMTSVLREWSAIWKQQYVENKL 38


>SB_51657| Best HMM Match : SH3_1 (HMM E-Value=2.69999e-40)
          Length = 313

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 12  VAVYNWKGDVRSGLPLEIGETVQILE-ENGAWFRGFSTKNRSTWGIFPACVVSLRP 66
           +A+Y++ G+    L +  G+T+Q+LE  N  W +G  + N +T GIFP+  V L P
Sbjct: 190 IALYSFTGESEDELTMWAGDTIQLLEIVNDDWLKG--SLNGNT-GIFPSSYVELTP 242


>SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)
          Length = 288

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 9   KLAVAVYNWKGDVRSGLPLEIGETVQILEE-NGAWFRGFSTKNRSTWGIFPACVVSL 64
           +L  A+YN+K      L L+ GE   +LE+    WF+G S  ++   G+FP   V L
Sbjct: 71  ELYTALYNYKPQKEDELELKQGECYYVLEKCKDGWFKGVSLHSQKR-GVFPGNYVRL 126


>SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 9   KLAVAVYNWKGDVRSGLPLEIGETVQILEE-NGAWFRGFSTKNRSTWGIFPACVVSL 64
           +L  A+YN+K      L L+ GE   +LE+    WF+G S  ++   G+FP   V L
Sbjct: 71  ELYTALYNYKPQKEDELELKQGECYYVLEKCKDGWFKGVSLHSQKR-GVFPGNYVRL 126


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 80  LKDDPLVREIACVLREWARLWKKLYV 105
           L++  LV E+  VLREW  +W+ LY+
Sbjct: 7   LQEISLVEEMTSVLREWGNMWQNLYL 32


>SB_8979| Best HMM Match : SH3_1 (HMM E-Value=3.6e-05)
          Length = 169

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 13 AVYNWKGDVRSGLPLEIGETVQILEE-NGAWFRGFSTK 49
          A+Y +       LPLE GE V +LE+ +  WF G ST+
Sbjct: 61 AMYGYSPQNEDELPLEEGEEVFVLEKCDDGWFVGHSTR 98


>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
          Length = 689

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 11  AVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVVSLRPCTVK 70
           A+A+Y ++G     L     + + I E+   W+ G     +  W  FP   V L    VK
Sbjct: 138 AIALYPYRGKKDDMLSFNKNDIIAIKEQQDTWWSG-ELNGKKGW--FPKTYVKLTSTAVK 194

Query: 71  GSG 73
            +G
Sbjct: 195 TTG 197


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 25  LPLEIGETVQILEEN--GAWFRGFSTKNRSTWGIFPACVVSL 64
           L  + G+ ++I+E+N  G W        + T G FPA +V L
Sbjct: 289 LSFKTGDVIEIIEQNESGRWKGKIFVGKKETIGYFPASMVKL 330


>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 1034

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 9   KLAVAVYNWKGDVRSGLPLEIGETVQILEENG-AWFRGFSTKNRSTWGIFPACV 61
           +  VA+ ++       + L+ G+ V++LEE G  W RG       T GIFP CV
Sbjct: 126 RYVVAIQSYSAQRPGEISLKKGDFVKVLEEIGNNWLRG---DINGTIGIFP-CV 175


>SB_34057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 14 VYNWKGDVRSGLPLEIGETVQILE 37
          ++N+ G+   GL + +GETV I E
Sbjct: 2  IHNYDGNTPHGLRINVGETVHIFE 25


>SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)
          Length = 413

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 68  TVKGSGATAVAELKDDPLVREIACVLREWARLWKKLYVFRN 108
           TV     T +  L  D L +++ C  RE  RL KKL  F +
Sbjct: 358 TVLKEHDTQLHRLSQDELEKQVECAKREKKRLRKKLKKFED 398


>SB_34778| Best HMM Match : Ank (HMM E-Value=0)
          Length = 592

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 30  GETVQILEENGAWFRGFSTKNRSTWGIFPACVVSLRPCTVKGSGAT 75
           G  V +L+ENG     F+++  ST  I   C + + PC     G T
Sbjct: 239 GGYVNLLDENGWNCMHFASQAGSTEVIKELCKLEMDPCCPTRDGLT 284


>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
          Length = 1022

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 68  TVKGSGATAVAELKDDPLVREIACVLREWARLWKKL 103
           TV  S  T   + K+  + R+ +C L+E   LWK+L
Sbjct: 279 TVPKSKKTQHRKTKNSNITRKRSCSLQESPDLWKRL 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,040,544
Number of Sequences: 59808
Number of extensions: 151484
Number of successful extensions: 217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 13
length of query: 110
length of database: 16,821,457
effective HSP length: 72
effective length of query: 38
effective length of database: 12,515,281
effective search space: 475580678
effective search space used: 475580678
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)