Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000240-TA|BGIBMGA000240-PA|IPR011511|Variant SH3,
IPR001452|Src homology-3
         (110 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   2.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 53  TWGIFPACVVSLRPCTVKGSGATAVAELKDDP 84
           T G+ P CVV    C VK     A  E KD P
Sbjct: 249 TVGMRPECVVPEYQCAVKRKEEKAQKE-KDKP 279


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 84  PLVREIACVLREWARLWKKLYVFRN 108
           P+V++I  V  EW      LY+  N
Sbjct: 343 PMVKQIDTVAAEWPATTNYLYLTYN 367


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,115
Number of Sequences: 429
Number of extensions: 1257
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 110
length of database: 140,377
effective HSP length: 50
effective length of query: 60
effective length of database: 118,927
effective search space:  7135620
effective search space used:  7135620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)