Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000240-TA|BGIBMGA000240-PA|IPR011511|Variant SH3,
IPR001452|Src homology-3
         (110 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31350.1 68417.m04446 expressed protein contains Pfam profile...    27   2.8  
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    25   8.6  
At5g16510.2 68418.m01931 reversibly glycosylated polypeptide, pu...    25   8.6  
At5g16510.1 68418.m01930 reversibly glycosylated polypeptide, pu...    25   8.6  
At4g15820.1 68417.m02407 wound-responsive protein-related contai...    25   8.6  

>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 711

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 6   KTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVVSLR 65
           K P+LA  V NWK   ++    +  E  +IL E+ A     S   R+ +    A    L+
Sbjct: 177 KAPELATEVSNWKKADQAIKETDSPEYYRILHEDPA---SCSILRRANFPTLIAVAEKLK 233

Query: 66  PCTVKGSGATAVAELKD 82
              + GS     AE+ D
Sbjct: 234 NRVLGGSNKVVNAEISD 250


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 30  GETVQILEENGAWFRGFSTKNRS-TWG-IFPACVVSLRPCTVKGSGATAVA 78
           G TVQIL    A FR   TK+ +  +G IF A VV       KG  + ++A
Sbjct: 311 GSTVQILGAEKALFRALKTKHATPKYGLIFHASVVGQAAPKNKGKISRSLA 361


>At5g16510.2 68418.m01931 reversibly glycosylated polypeptide,
           putative similar to reversibly glycosylatable
           polypeptide (RGP1) [Pisum sativum] GI:2130521; contains
           Pfam profile PF03214: Reversibly glycosylated
           polypeptide
          Length = 348

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 58  PACVVSLRPCTVKGSGATAVAELKDDPLVREIACVLREWARLWKKL 103
           P   + +  C ++ + A       DDP   + A  + +W +LW  +
Sbjct: 299 PETALKVEDCVIELAKAVKEQLGSDDPAFTQAADAMVKWVQLWNSV 344


>At5g16510.1 68418.m01930 reversibly glycosylated polypeptide,
           putative similar to reversibly glycosylatable
           polypeptide (RGP1) [Pisum sativum] GI:2130521; contains
           Pfam profile PF03214: Reversibly glycosylated
           polypeptide
          Length = 348

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 58  PACVVSLRPCTVKGSGATAVAELKDDPLVREIACVLREWARLWKKL 103
           P   + +  C ++ + A       DDP   + A  + +W +LW  +
Sbjct: 299 PETALKVEDCVIELAKAVKEQLGSDDPAFTQAADAMVKWVQLWNSV 344


>At4g15820.1 68417.m02407 wound-responsive protein-related contains
           weak similarity to KED [Nicotiana tabacum]
           gi|8096269|dbj|BAA95789
          Length = 460

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 19  GDVRSGLPLEIGETVQILEENGAWF 43
           GDVR G PL   +  Q  +EN  W+
Sbjct: 315 GDVRKGTPLRRAKEKQSEKENKLWW 339


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,555
Number of Sequences: 28952
Number of extensions: 109602
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 5
length of query: 110
length of database: 12,070,560
effective HSP length: 71
effective length of query: 39
effective length of database: 10,014,968
effective search space: 390583752
effective search space used: 390583752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)