GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000240-TA|BGIBMGA000240-PA|IPR011511|Variant SH3,
IPR001452|Src homology-3
         (110 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   2.2  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   2.9  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   2.9  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   2.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 28  EIGETVQILEENGAWFRGFSTKNRSTW 54
           E   + +++ E G  FR +  +N ++W
Sbjct: 293 ESNPSERVMRELGRIFRAYCRENHASW 319


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
          protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 50 NRSTWGIFPACVVSLRPCTVKG 71
          NR     + AC++S  PC  +G
Sbjct: 36 NRRMVNYYAACLLSKGPCPPQG 57


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 93  LREWARLWKKLY 104
           LREW RL+  +Y
Sbjct: 66  LREWGRLYYPIY 77


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 93  LREWARLWKKLY 104
           LREW RL+  +Y
Sbjct: 66  LREWGRLYYPIY 77


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,830
Number of Sequences: 317
Number of extensions: 953
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 114,650
effective HSP length: 49
effective length of query: 61
effective length of database: 99,117
effective search space:  6046137
effective search space used:  6046137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)