Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000240-TA|BGIBMGA000240-PA|IPR011511|Variant SH3,
IPR001452|Src homology-3
(110 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-30|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 36 0.005
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 32 0.077
AL021492-14|CAA16388.2| 473|Caenorhabditis elegans Hypothetical... 31 0.18
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 30 0.41
AL132949-8|CAB61079.1| 471|Caenorhabditis elegans Hypothetical ... 27 2.2
Z99281-41|CAE45094.2| 665|Caenorhabditis elegans Hypothetical p... 26 6.7
Z99281-40|CAE45095.2| 845|Caenorhabditis elegans Hypothetical p... 26 6.7
Z99281-39|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 26 6.7
Z99281-38|CAB16527.3| 862|Caenorhabditis elegans Hypothetical p... 26 6.7
Z99281-36|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 26 6.7
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 26 6.7
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 26 6.7
Z81051-6|CAB02867.1| 251|Caenorhabditis elegans Hypothetical pr... 25 8.8
>AL117204-30|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 9 KLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVVSL 64
+L +Y+++ + L L +G+T+ +LE+N W++G + GIFPA V +
Sbjct: 897 QLYTVIYDFEAVETTDLALHVGDTILVLEKNDEWWKG---RCNGREGIFPANYVEI 949
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 32.3 bits (70), Expect = 0.077
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 4 PSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEE-NGAWFRGFSTKNRSTWGIFPACVV 62
P ++ VA Y + L +G+ ++++ + W +G K+ G+FP V
Sbjct: 44 PQPQAQIYVATYAYSSKQDDELSFVVGDLIELISDVEDGWSKG-KLKSTGAVGMFPTNFV 102
Query: 63 SLRPCTVKGSGATAVA 78
+L+P + A A A
Sbjct: 103 TLKPTPSTSAAAVAPA 118
>AL021492-14|CAA16388.2| 473|Caenorhabditis elegans Hypothetical
protein Y45F10D.13a protein.
Length = 473
Score = 31.1 bits (67), Expect = 0.18
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 11 AVAVYNWKGDVRSGLPLEIGETVQILEE-NGAWFRGFSTKNRSTWGIFPACVVSL 64
A AVY ++ LPL G+ ++I+ E +G W G RS GIFP V +
Sbjct: 156 ATAVYKFEPRSARELPLNRGDIIRIIREVDGYWMEG-ERNGRS--GIFPTSYVQI 207
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 29.9 bits (64), Expect = 0.41
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 4 PSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGA-WFRGFSTKNRSTWGIFPACVV 62
P+ + +A +++ + L IG+TV I ++ A WF G +N+ T+GI P+ +
Sbjct: 189 PAISTPYGIAKFDYAPTQSDEMGLRIGDTVLISKKVDAEWFYG-ENQNQRTFGIVPSSYL 247
Query: 63 SLR 65
++
Sbjct: 248 DIK 250
>AL132949-8|CAB61079.1| 471|Caenorhabditis elegans Hypothetical
protein Y53F4B.10 protein.
Length = 471
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 7 TPKLAVAVYNWKGDVRSGLPLEIGETVQILEEN 39
TP + A+ WK R L G+ + +L EN
Sbjct: 398 TPSYSAAIRKWKKGTRCSLETAAGDILSVLVEN 430
>Z99281-41|CAE45094.2| 665|Caenorhabditis elegans Hypothetical
protein Y57G11C.24e protein.
Length = 665
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 IPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVV 62
I +K KLAV Y+ G L + GE ++++ + W+ + R G P ++
Sbjct: 349 IVAKGGKLAVVTYDRGGQNTKELTVHKGEYLEVIFDERNWWECKNMHQRV--GYVPHTIL 406
Query: 63 SLRP 66
S+ P
Sbjct: 407 SMVP 410
>Z99281-40|CAE45095.2| 845|Caenorhabditis elegans Hypothetical
protein Y57G11C.24d protein.
Length = 845
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 IPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVV 62
I +K KLAV Y+ G L + GE ++++ + W+ + R G P ++
Sbjct: 529 IVAKGGKLAVVTYDRGGQNTKELTVHKGEYLEVIFDERNWWECKNMHQRV--GYVPHTIL 586
Query: 63 SLRP 66
S+ P
Sbjct: 587 SMVP 590
>Z99281-39|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 IPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVV 62
I +K KLAV Y+ G L + GE ++++ + W+ + R G P ++
Sbjct: 626 IVAKGGKLAVVTYDRGGQNTKELTVHKGEYLEVIFDERNWWECKNMHQRV--GYVPHTIL 683
Query: 63 SLRP 66
S+ P
Sbjct: 684 SMVP 687
>Z99281-38|CAB16527.3| 862|Caenorhabditis elegans Hypothetical
protein Y57G11C.24a protein.
Length = 862
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 IPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVV 62
I +K KLAV Y+ G L + GE ++++ + W+ + R G P ++
Sbjct: 546 IVAKGGKLAVVTYDRGGQNTKELTVHKGEYLEVIFDERNWWECKNMHQRV--GYVPHTIL 603
Query: 63 SLRP 66
S+ P
Sbjct: 604 SMVP 607
>Z99281-36|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 IPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVV 62
I +K KLAV Y+ G L + GE ++++ + W+ + R G P ++
Sbjct: 601 IVAKGGKLAVVTYDRGGQNTKELTVHKGEYLEVIFDERNWWECKNMHQRV--GYVPHTIL 658
Query: 63 SLRP 66
S+ P
Sbjct: 659 SMVP 662
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 IPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVV 62
I +K KLAV Y+ G L + GE ++++ + W+ + R G P ++
Sbjct: 626 IVAKGGKLAVVTYDRGGQNTKELTVHKGEYLEVIFDERNWWECKNMHQRV--GYVPHTIL 683
Query: 63 SLRP 66
S+ P
Sbjct: 684 SMVP 687
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 IPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPACVV 62
I +K KLAV Y+ G L + GE ++++ + W+ + R G P ++
Sbjct: 601 IVAKGGKLAVVTYDRGGQNTKELTVHKGEYLEVIFDERNWWECKNMHQRV--GYVPHTIL 658
Query: 63 SLRP 66
S+ P
Sbjct: 659 SMVP 662
>Z81051-6|CAB02867.1| 251|Caenorhabditis elegans Hypothetical
protein C55A6.7 protein.
Length = 251
Score = 25.4 bits (53), Expect = 8.8
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 1 MWIPSKTPKLAVAVYNWKGDVRSGLPLEIGETVQILEENGAWFRGFSTKNRSTWGIFPAC 60
M S P + A +GD L + G + I E F G ++N S G + A
Sbjct: 119 MLTQSLVPLIIKASKRQEGDT---LSVSRGAIINIASE----FLGSISENTSGSGEYKAM 171
Query: 61 VVSLRPCTVKGSGATAVAELKDDPLVREIAC 91
+ C V T +LKDD ++ C
Sbjct: 172 AYRMTKCAVNQFTKTLSIDLKDDHILTAGIC 202
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.137 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,532
Number of Sequences: 27539
Number of extensions: 104131
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 14
length of query: 110
length of database: 12,573,161
effective HSP length: 72
effective length of query: 38
effective length of database: 10,590,353
effective search space: 402433414
effective search space used: 402433414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
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