Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000239-TA|BGIBMGA000239-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   2.2  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   5.1  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   6.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   6.7  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    26   8.8  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 142 SAHDICK-----DHMIEDEIILGNSTGFRDIYDETV-VPQIALEYAYASR 185
           + HD C+     DH I D I L +     D Y+ T+ VPQ+  E   +SR
Sbjct: 581 TVHDKCQKVAKLDHYIRDNIELNSKEREHDCYEGTLAVPQVNTEIRKSSR 630


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 181 AYASRWFHTIQYGAQKLFDKNFNLIKEVPMVNF 213
           A A R++ T +Y   +LF++ FN    + M NF
Sbjct: 244 AVAIRFWQTDKYDKNELFEQWFNRASAIAMANF 276


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 288  GYSKKHVDFDDLTDHISDEKIQQLKQVYETAEDIELMAGIWVENVIEGAQVPPTV 342
            G+S+  + +  L++H+S E ++    +Y      +L A +   N +  A +P T+
Sbjct: 998  GHSENKIPYTSLSNHLSTEIVKLDHDIYNYE---KLWADVGFRNAVLRASIPKTL 1049


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 392 DDVEKIQPKAFTIVGKGNNLVSCDEIPAIDFTHWKEE 428
           D++E I P+A  ++  G N++S  E P ++ T  +E+
Sbjct: 547 DELEDIDPRANVVLNVGPNMLSVGEAP-VESTSKEED 582


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 78  HTPTFRILPADFREDFEPRLTSSGKEY---PLARH 109
           H+P FR LP+D+ E  + ++  + + Y   PL  H
Sbjct: 287 HSPPFRQLPSDYLEVNDGKIPKASEPYTSIPLVSH 321


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,823
Number of Sequences: 5004
Number of extensions: 90747
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 6
length of query: 429
length of database: 2,362,478
effective HSP length: 75
effective length of query: 354
effective length of database: 1,987,178
effective search space: 703461012
effective search space used: 703461012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)