Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000239-TA|BGIBMGA000239-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    31   1.1  
At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family pr...    31   2.0  
At2g02410.1 68415.m00181 expressed protein                             29   6.0  

>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 234 YYQATGKADSTVDPDISDIGLGPVQEVFDIPTTDLAKGR 272
           + +A   ADST+DPD S+  +  +QE    P+  L KG+
Sbjct: 742 FLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQ 780


>At5g67110.1 68418.m08461 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 210

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 291 KKHVDFDDLTDHIS--DEKIQQLKQVYETAEDIELMAGIWVENVIEGAQVPPTVHCLLSN 348
           +K +   + TD  S  DE I+ LKQ+    + + +M G+ + N +   QVPP  H  ++ 
Sbjct: 117 QKLIPNSNKTDKASMLDEAIEYLKQLQLQVQTLAVMNGLGL-NPMRLPQVPPPTHTRINE 175

Query: 349 QLKRSIIID 357
            L++ + ++
Sbjct: 176 TLEQDLNLE 184


>At2g02410.1 68415.m00181 expressed protein
          Length = 308

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 122 DAKLTQLSAYYIEFMAIDVVSAHDICKDHMIEDEIILGNSTGFRDIYDET--VVPQIALE 179
           DA ++ L  +  +F  +DV+ + + C D  IE E++     G   ++  T  V  Q A  
Sbjct: 183 DALMSGLPTHKEDFAGVDVIFSGETCADAWIEKEVVALREDGCPKVWVVTSDVCQQQAAH 242

Query: 180 YAYASRW 186
            A A  W
Sbjct: 243 GAGAYIW 249


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,469,945
Number of Sequences: 28952
Number of extensions: 444027
Number of successful extensions: 915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 3
length of query: 429
length of database: 12,070,560
effective HSP length: 83
effective length of query: 346
effective length of database: 9,667,544
effective search space: 3344970224
effective search space used: 3344970224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)