GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000239-TA|BGIBMGA000239-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0002 - 13567257-13567373,13568049-13568243,13569750-135698...    29   5.4  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    29   5.4  
03_02_0179 - 6201393-6202365,6202470-6202610,6202728-6202767,620...    29   9.5  

>09_04_0002 -
           13567257-13567373,13568049-13568243,13569750-13569869,
           13569958-13570028,13570066-13570126,13570170-13570202,
           13570303-13570431,13571958-13572042,13572143-13572252,
           13572534-13572606,13572688-13572810,13573111-13573289,
           13573659-13573736,13573813-13573871,13574122-13574212,
           13574265-13574442,13574553-13575088
          Length = 745

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 177 ALEYAYASR-WFHTIQYGAQKLFDKNFNL 204
           +L   YASR WF +++ G QKL+ KN ++
Sbjct: 569 SLALFYASRVWFVSLRRGGQKLYQKNLDI 597


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 113 NLLTIGLATDAKLTQLSA---YYIEFMAIDVVSAHDICK-DHMIEDEIILGNSTGFRDIY 168
           N  TIGLA   KL+  +     Y   + +D + ++ I K DH+I +   +G       ++
Sbjct: 91  NSKTIGLAK-RKLSLYAEDVPLYEPALKVDDMESYAISKIDHIINNHSGIGVKVFKLQLF 149

Query: 169 DETVVPQIALEYAYASRWF-HTIQYGAQKLFDKNFNLIKEVPMVNFSLSVQSLAIG 223
                P I  + A   +WF H I+ G ++L     +L K+    NF  S+ S+A+G
Sbjct: 150 ---ACPNI--DAAVLDKWFVHVIKAGIKEL-SLEMSLCKKRTEYNFPCSILSMALG 199


>03_02_0179 -
           6201393-6202365,6202470-6202610,6202728-6202767,
           6204390-6204791,6205567-6205696
          Length = 561

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 151 MIEDEIILGNSTGFRDIYDETVVPQIALEYAYASRWFHTIQYGAQKLFDKNFNLIKEVPM 210
           +I   I+LG   GF +    +  P I    AY+   FH I YG ++   +  NL+ E+  
Sbjct: 134 LIVGRILLGCGVGFAN--QASNFPIILSLQAYSIISFHIISYGVKQKI-RTGNLLAELVP 190

Query: 211 VNFSLSVQSLAIGDIMSTVTRG 232
           +   +    L + +I  T  RG
Sbjct: 191 LGEYVQAVPLFLSEIAPTRIRG 212


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,399
Number of Sequences: 37544
Number of extensions: 526253
Number of successful extensions: 1064
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 3
length of query: 429
length of database: 14,793,348
effective HSP length: 84
effective length of query: 345
effective length of database: 11,639,652
effective search space: 4015679940
effective search space used: 4015679940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)