GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000239-TA|BGIBMGA000239-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   7e-19
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)               49   6e-06
SB_26887| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               47   3e-05
SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)         36   0.084
SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29)         31   1.4  
SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   29   7.3  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           29   7.3  
SB_33074| Best HMM Match : TUDOR (HMM E-Value=1.9e-30)                 29   9.6  
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            29   9.6  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           29   9.6  

>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 92.3 bits (219), Expect = 7e-19
 Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 9/173 (5%)

Query: 258  QEVFDIPTTDLAKGRYFGLPSYTKYRDFCSGYSKKHVD-FDDLTDHISDEKIQQ-LKQVY 315
            Q  FD+   ++ +GR  GLP Y  +R  C+     H + F++  D I D   +Q L +VY
Sbjct: 1074 QHGFDLAALNIQRGRDHGLPGYGVWRRECN---LTHAEIFEETRDEIRDPVTRQILDRVY 1130

Query: 316  E-TAEDIELMAGIWVENVIEGAQVPPTVHCLLSNQLKRSIIIDRHWYERPNRPHAFNHEQ 374
              + E  +L      EN ++GA V PT  C+L +Q +R    DR WYE       F  EQ
Sbjct: 1131 NGSVEFADLWVSGLAENPVKGASVGPTFLCILRSQFRRLRDGDRFWYENNG---VFGKEQ 1187

Query: 375  LQEIRKASLALLLCYVGDDVEKIQPKAFTIVGKGNNLVSCDEIPAIDFTHWKE 427
            L+EI+K SL+ ++C     +  +Q  AF      +  V+C  I  ID T WK+
Sbjct: 1188 LEEIKKISLSRVMCDNLPGIVSVQRDAFRAPSSSDLRVACARISGIDLTKWKD 1240



 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 47  CANNIQPCDETE----WRRTDGSCNNLYYPTRGAYHTPTFRILPADFRED 92
           C N    C +T     +R  DG+CNNL  P  G+   P  R+    + +D
Sbjct: 673 CTNRKVNCSDTRFNARYRTMDGTCNNLDNPLWGSAPVPFSRMSDPVYYDD 722


>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 647

 Score = 49.2 bits (112), Expect = 6e-06
 Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 12/202 (5%)

Query: 158 LGNSTGFRDIYDETVVPQIALEYAYASRWFHTIQYGAQKLFDKNFNLIKE--VPMVNFSL 215
           LG   G+    D T++   A     A R+ H +        + +F  I E  +P+     
Sbjct: 445 LGPYPGYNPNTDPTIINAFATA---AFRFGHGLIKPIINRLNSSFLPIPEGNIPLHKAFF 501

Query: 216 SVQSLAIGDIMSTVTRGSYYQATGK---ADSTVDPDISDIGLGPVQEV-FDIPTTDLAKG 271
           S   +     +  V RG + +A+     +D  V+ ++++        V  D+   ++ +G
Sbjct: 502 SPYRIVNEGGIDPVLRGLFAEASKSRENSDELVNTELTERLFEMAHAVALDLGALNIQRG 561

Query: 272 RYFGLPSYTKYRDFCSGYSKKHVDFDDLTDHISDEKIQ-QLKQVYETAEDIELMAGIWVE 330
           R   LP Y  +R  C+    +   FDDL + IS   I+ +L+++Y+   +++L     +E
Sbjct: 562 RDHALPGYNSWRKLCNLSVAE--SFDDLKNEISSADIRARLEKLYKDPSNVDLWLAGLLE 619

Query: 331 NVIEGAQVPPTVHCLLSNQLKR 352
           ++  G QV     C+L  Q KR
Sbjct: 620 DLEPGGQVGKVFSCILVEQFKR 641



 Score = 39.5 bits (88), Expect = 0.005
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 54  CDETEWRRTDGSCNNLYYPTRGAYHTPTFRILPADFREDFEPRLTSSGKE-YPLARHIKN 112
           C    +R  DG+CNNL +P  G   TP  R+L   +   F   +    K   P AR +  
Sbjct: 141 CFHLNYRSADGTCNNLQHPMWGGSLTPLKRLLRPIYENGFNAPIGWINKNARPSARLVST 200

Query: 113 NLLTIGLATDAK 124
            L+     TD K
Sbjct: 201 ELVAAANVTDDK 212


>SB_26887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 262 DIPTTDLAKGRYFGLPSYTKYRDFCSGYSKKHVDFDDLTDHISDEKIQ-QLKQVYETAED 320
           D+   ++ +GR   LP Y  +R  C+    +   FDDL + IS   I+ +L+++Y+   +
Sbjct: 8   DLGALNIQRGRDHALPGYNSWRKLCNLSVAE--SFDDLKNEISSADIRARLEKLYKDPSN 65

Query: 321 IELMAGIWVENVIEGAQVPPTVHCLLSNQLKR 352
           ++L     +E++  G QV     C+L  Q KR
Sbjct: 66  VDLWLAGLLEDLEPGGQVGKVFSCILVEQFKR 97


>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 231  RGSYYQATGKADSTVDPDISDIGLGPVQEVFDIPTTDLAKGRYFGLPSYTKYRDFCSGYS 290
            RG   Q     D+     + +   G      D+ +  + +GR  GL  Y   R+   G  
Sbjct: 1050 RGMLKQFAQNVDTKFTDAVRNFLFGTNTMGLDLVSLGIQRGRDHGLADYNAVRE-AIGLP 1108

Query: 291  KKHVDFDDLTDHISDEKIQQLKQVYETAEDIELMAGIWVENVIEGAQVPPTVHCLLSNQL 350
            ++   F ++T    DE   +  +VY + +D++L  G   E  +EG  V  T   +++ Q 
Sbjct: 1109 RR-ASFAEITP---DENTLKKFEVYPSVDDVDLWVGGLAEEHVEGGCVGETFARIIAMQF 1164

Query: 351  KRSIIIDRHWYERPN 365
            K     DR WYE P+
Sbjct: 1165 KVLRDGDRFWYENPD 1179


>SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)
          Length = 359

 Score = 35.5 bits (78), Expect = 0.084
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 51  IQPCD-ETEWRRTDGSCNNLYYPTRGAYHTPTFRIL-PADFREDFEPRLTSSGKEYPLAR 108
           +  CD ++ +R   G CNNL Y   GA +TP  R+  PA      +PR    G +   AR
Sbjct: 157 VNKCDRKSPYRTITGVCNNLRYKNWGAANTPFTRVARPAYADMMSKPRAAVGGGQLTNAR 216

Query: 109 HIKNNLLTIGLATDAKLTQLSAYYIEFMAIDV 140
            +   L         +++ ++  + +F+  D+
Sbjct: 217 KVSFTLFQDKDRPSKRMSHMAMIWGQFIDHDI 248


>SB_30681| Best HMM Match : An_peroxidase (HMM E-Value=4.3e-29)
          Length = 576

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 54  CDETE-WRRTDGSCNNLYYPTRGAYHTPTFRILPADFREDFE-PRLTSSGKEYPLARHI 110
           C+  E +R   G CNN +    GA  +P  R+  A + +    PR    G + P AR +
Sbjct: 126 CESDERYRSISGICNNFFNKYWGAAFSPFARVANAAYADGMSAPRAAVGGGDLPNARKV 184


>SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 286 CSGYSKKHVDFDDLTDHISDEKIQQLKQVYETAEDIELMAGI 327
           CS  S + +D+D++     +E +++LK  ++  ED+   +G+
Sbjct: 156 CSERSLEDIDYDEVKKKFGEEMVKELKSKHKKIEDLGCSSGV 197


>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 216 SVQSLAIGDIMSTVTRGSYYQATGKADSTVDPD-ISDIGLGPVQEVFDIPTTDLAKGRY 273
           SV +    D MSTV + + +  T   D   DPD + +I + P  +V +I TTD    +Y
Sbjct: 450 SVTTEGCSDTMSTV-KLTVHTKTVDGDPNTDPDDVIEITVEPKDDVMEIKTTDKIGDKY 507


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 294 VDFDDLTDHI--SDEKIQQLKQVYETAEDIELMAGIWVEN 331
           VDFD + ++I  SD+ +Q +K+ +   + +E +A + V+N
Sbjct: 514 VDFDPIEEYIYWSDDTLQVIKRAHIDGKGVETVASVEVQN 553


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 7    SILIILVVNLAKAVYYDSWEGTLLTDEQRQAYEKANILSTCANNIQPCDETEW 59
            ++  ++ +N++K +Y D WEG + + + R+ Y   +        +  CD T +
Sbjct: 1941 NVSYVVELNVSKTIYEDVWEGGVHSIKSREVYHIVHETRYNVTYLIGCDYTNF 1993


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)

Query: 313 QVYETAEDIELMAGIWVENVIE-------GAQVPPTVHCLLSNQLKRSII 355
           Q+YE  E+ +   G+W+E  IE       G  + P V  L  N+ +RSI+
Sbjct: 435 QMYEGVEEFQYDDGVWLEKQIEEDENAENGGLMLPDVSSLTLNEEQRSIV 484


>SB_33074| Best HMM Match : TUDOR (HMM E-Value=1.9e-30)
          Length = 405

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 307 KIQQLKQVYETAEDIELMAGIWVENVIEGAQVPPTVHCLLSNQLKRSIIIDRHWYERPNR 366
           K+++L Q+     ++   A  +V+ ++EG ++   V   LSN L    +++R   +  N 
Sbjct: 42  KVEKLFQLPVAFRELPFQANYFVKKMVEGKELEGKVVFSLSNTLWLDPLLERRVLKNINV 101

Query: 367 PHAFNHEQLQEIRKASLAL 385
               N+ +L E+ K  LA+
Sbjct: 102 TTNMNNIRL-ELIKQGLAI 119


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 53  PCDETEWRRTDGSCNNLYYPTRGAYHTPT 81
           P  E      D + +N+ YPT GA +TPT
Sbjct: 468 PTSEAHGHPLDSTVSNVMYPTPGAGNTPT 496


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 171 TVVPQIALEYAYASRWFHTIQYGAQKLFDKNFNLIKEVPMVNFSLSVQSLAIGDIMSTVT 230
           T+ P++ LEY      F  I    QK++  +  L+  +P    S  V  +  G   S VT
Sbjct: 308 TINPRV-LEYGNYLVQFRVIMESNQKIYGTDIKLLTVIP----SSLVAQIKGG---SLVT 359

Query: 231 RGSYYQATGKADSTVDPDI 249
           RG     T  A  ++DPD+
Sbjct: 360 RGFNQLITLDASPSIDPDV 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,800,419
Number of Sequences: 59808
Number of extensions: 620625
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 18
length of query: 429
length of database: 16,821,457
effective HSP length: 84
effective length of query: 345
effective length of database: 11,797,585
effective search space: 4070166825
effective search space used: 4070166825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)